D. rerio Gene: npdc1a - ENSDARG00000074697 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074697
Namenpdc1a
Descriptionneural proliferation, differentiation and control, 1a [Source:ZFIN;Acc:ZDB-GENE-031204-31]
OrganismDanio rerio (zebrafish)
Synonym(s)npdc1, npdc1 {eco:0000313|ensembl:ensdarp00000098274,gn eco:0000313|zfin:zdb-gene-031204-31}, sb:cb1030, zgc:194693

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
610
  • 610
  • 8.32e3
97.96
  • 97.96
  • 72.14
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.81e3
  • 1.81e3
93.95
  • 93.95
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.33e3
  • 2.33e3
92.21
  • 92.21
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
  • 2.49e3
91.74
  • 91.74
  • 91.67
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.51
  • 91.51
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.91e3
  • 2.91e3
90.25
  • 90.25
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
  • 4.65e3
89.82
  • 89.82
  • 84.44
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.45e3
  • 4.45e3
85.09
  • 85.09
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.66e3
  • 4.66e3
  • 1.78e4
84.40
  • 84.40
  • 40.32
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.27
  • 84.27
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
4.73e3
  • 4.73e3
  • 1.03e4
  • 1.47e4
  • 1.48e4
  • 1.53e4
  • 1.54e4
  • 1.57e4
  • 1.67e4
  • 1.75e4
84.17
  • 84.17
  • 65.65
  • 50.79
  • 50.56
  • 48.82
  • 48.58
  • 47.44
  • 44.21
  • 41.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
5.01e3
  • 5.01e3
  • 9.87e3
  • 1.08e4
83.24
  • 83.24
  • 66.94
  • 63.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
82.92
  • 82.92
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.13e3
  • 5.13e3
82.84
  • 82.84
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
5.51e3
  • 5.51e3
  • 7.22e3
  • 7.27e3
  • 8.61e3
  • 1.08e4
81.54
  • 81.54
  • 75.81
  • 75.66
  • 71.17
  • 63.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.30
  • 80.30
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.97e3
  • 6.97e3
  • 7.97e3
  • 8.54e3
  • 8.96e3
76.66
  • 76.66
  • 73.32
  • 71.42
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.29e3
  • 7.29e3
75.58
  • 75.58
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.52e3
  • 7.52e3
74.82
  • 74.82
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.60e3
  • 7.60e3
74.57
  • 74.57
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
74.35
  • 74.35
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000037Larval:Day 5
8.30e3
  • 8.30e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.99
  • 71.99
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.78e3
  • 8.78e3
70.59
  • 70.59
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.14
  • 70.14
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.19e3
  • 9.19e3
  • 9.19e3
  • 1.07e4
69.22
  • 69.22
  • 69.22
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.33e3
  • 9.33e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
68.74
  • 68.74
  • 66.65
  • 65.61
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
9.53e3
  • 9.53e3
  • 1.09e4
  • 1.09e4
  • 1.22e4
  • 1.33e4
  • 1.37e4
  • 1.47e4
  • 1.48e4
  • 1.51e4
  • 1.52e4
  • 1.53e4
  • 1.55e4
68.10
  • 68.10
  • 63.62
  • 63.34
  • 58.98
  • 55.32
  • 54.17
  • 50.62
  • 50.49
  • 49.41
  • 49.16
  • 48.89
  • 48.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
9.74e3
  • 9.74e3
  • 1.23e4
  • 1.35e4
  • 1.36e4
67.39
  • 67.39
  • 58.85
  • 54.75
  • 54.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.83
  • 64.83
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.33e4
  • 1.33e4
  • 1.33e4
  • 1.34e4
55.53
  • 55.53
  • 55.53
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.54e4
  • 1.54e4
48.48
  • 48.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000074697 (npdc1a)
ZFINZDB-GENE-031204-31 (npdc1a)
EMBLBC163322, BC163327, FP085417, FP089537
Uniprot/SPTREMBLB3DJ13, B3DJ13_DANRE

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