Gene: ccdc97 - ENSDARG00000074703 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000074703
Name	ccdc97
Description	coiled-coil domain containing 97 [Source:ZFIN;Acc:ZDB-GENE-131127-366]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch211-209h5.3
Orthologs(s)	23 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	3.82e3 3.82e3 7.09e3	87.21 87.21 76.26	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	4.25e3 4.25e3 5.29e3 8.09e3 9.91e3 1.05e4	85.76 85.76 82.28 72.91 66.82 64.99	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	4.43e3 4.43e3	85.17 85.17	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	4.61e3 4.61e3	84.58 84.58	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	6.42e3 6.42e3	78.51 78.51	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	6.61e3 6.61e3 8.90e3	77.87 77.87 70.21	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	7.04e3 7.04e3	76.42 76.42	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	7.14e3 7.14e3 1.08e4	76.09 76.09 63.98	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	7.41e3 7.41e3 8.20e3	75.18 75.18 72.56	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	7.49e3 7.49e3 8.87e3	74.91 74.91 70.29	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.71e3 7.71e3	74.20 74.20	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.83e3 7.83e3	73.79 73.79	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.95e3 7.95e3	73.40 73.40	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.96e3 7.96e3	73.34 73.34	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	8.02e3 8.02e3	73.13 73.13	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	8.31e3 8.31e3	72.18 72.18	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	8.56e3 8.56e3	71.34 71.34	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	8.71e3 8.71e3	70.85 70.85	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	9.24e3 9.24e3	69.06 69.06	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	9.59e3 9.59e3	67.88 67.88	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	9.61e3 9.61e3	67.81 67.81	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.00e4 1.00e4	66.49 66.49	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.06e4 1.06e4	64.45 64.45	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	63.94 63.94	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000142039 CCDC97 ENSMUSG00000002608 Ccdc97 ENSPTRG00000011020 CCDC97 ENSGGOG00000026022 CCDC97 ENSMMUG00000008143 CCDC97 ENSRNOG00000020675 Ccdc97 ENSBTAG00000039635 CCDC97 ENSSSCG00000003016 ENSECAG00000010187 CCDC97 ENSOCUG00000016682 CCDC97 ENSCAFG00000005015 CCDC97 ENSFCAG00000005435 CCDC97 ENSCPOG00000014387 CCDC97 ENSEEUG00000011654 CCDC97 ENSACAG00000003849 CCDC97 ENSXETG00000018736 ccdc97	Compare expression	[+]
Bilateria	23 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	23 genes ENSG00000142039 CCDC97 ENSMUSG00000002608 Ccdc97 FBgn0032017 CG7810 WBGene00011194 R10D12.13 ENSPTRG00000011020 CCDC97 ENSGGOG00000026022 CCDC97 ENSMMUG00000008143 CCDC97 ENSRNOG00000020675 Ccdc97 ENSBTAG00000039635 CCDC97 ENSSSCG00000003016 ENSECAG00000010187 CCDC97 ENSOCUG00000016682 CCDC97 ENSCAFG00000005015 CCDC97 ENSFCAG00000005435 CCDC97 ENSCPOG00000014387 CCDC97 ENSEEUG00000011654 CCDC97 ENSACAG00000003849 CCDC97 ENSXETG00000018736 ccdc97 FBgn0092290 GF15265 FBgn0136990 GI14237 FBgn0193825 GD22421 FBgn0207687 GJ20547 FBgn0228882 GE11055	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000074703.

Cross-references

Ensembl	ENSDARG00000074703 (ccdc97)
ZFIN	ZDB-GENE-131127-366 (ccdc97)
EMBL	BX649356
Uniprot/SPTREMBL	E7FBN4, E7FBN4_DANRE