D. rerio Gene: mhc1zja - ENSDARG00000074765 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000074765
Namemhc1zja
Descriptionmajor histocompatibility complex class I ZJA [Source:ZFIN;Acc:ZDB-GENE-130206-11]
OrganismDanio rerio (zebrafish)
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.26e3
  • 6.26e3
79.03
  • 79.03
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.25
  • 78.25
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.79e3
  • 6.79e3
  • 6.93e3
77.27
  • 77.27
  • 76.80
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
76.68
  • 76.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.28e3
  • 8.28e3
72.27
  • 72.27
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.48e3
  • 8.48e3
71.60
  • 71.60
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.00e3
  • 9.00e3
69.85
  • 69.85
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
9.01e3
  • 9.01e3
  • 1.50e4
69.83
  • 69.83
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.15e3
  • 9.15e3
69.38
  • 69.38
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.56e3
  • 9.56e3
  • 1.19e4
68.00
  • 68.00
  • 60.14
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.51
  • 65.51
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.09
  • 65.09
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.80
  • 62.80
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.21e4
  • 1.21e4
  • 1.94e4
59.63
  • 59.63
  • 34.89
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.34
  • 53.34
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.40e4
  • 1.40e4
53.27
  • 53.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.84
  • 50.84
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.99e4
49.97
  • 49.97
  • 33.40
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.61
  • 45.61
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.67e4
  • 1.67e4
  • 1.71e4
  • 1.78e4
  • 1.92e4
  • 2.13e4
44.24
  • 44.24
  • 42.83
  • 40.30
  • 35.65
  • 28.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.03
  • 42.03
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.03
  • 42.03
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.78e4
  • 1.78e4
  • 2.12e4
40.43
  • 40.43
  • 29.02
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000074765.

Cross-references

EnsemblENSDARG00000074765 (mhc1zja)
ZFINZDB-GENE-130206-11 (mhc1zja)
EMBLCU394254, KC607866, KC607867
Uniprot/SPTREMBLA0A0N4SU34, A0A0N4SU34_DANRE, E9QGM2, E9QGM2_DANRE, F1R6J5, F1R6J5_DANRE

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