Gene: brinp3a.1 - ENSDARG00000076351 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000076351
Name	brinp3a.1
Description	bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-080218-16]
Organism	Danio rerio (zebrafish)
Synonym(s)	brinp3a, brinp3b, fam5ca, si:dkey-19a16.1, zgc:175108
Paralog(s)	4 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000468	multi-cellular organism	[+] 3 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000022Gastrula:Bud UBERON:0000066fully formed stage	2.55e3 2.55e3 6.64e3 1.49e4	91.46 91.46 77.77 50.25	AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	6.19e3 6.19e3 1.67e4	79.27 79.27 44.06	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000029Pharyngula:Prim-5	7.00e3 7.00e3 1.34e4	76.56 76.56 54.99	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.06e4 1.06e4 1.57e4	64.45 64.45 47.43	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	1.10e4 1.10e4 1.53e4 2.01e4 2.05e4 2.08e4	63.31 63.31 48.74 32.72 31.41 30.37	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.19e4 1.19e4	59.99 59.99	AEIR AEIR
UBERON:0001891	midbrain	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.29e4 1.29e4 1.34e4	56.65 56.65 54.99	AEIR AEIR AEIR
UBERON:0002028	hindbrain	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.34e4 1.34e4 1.39e4	54.97 54.97 53.55	AEIR AEIR AEIR
UBERON:0000080	mesonephros	[+] 1 stage UBERON:0000104life cycle	1.50e4 1.50e4	49.92 49.92	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.67e4 1.67e4	44.17 44.17	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.68e4 1.68e4	43.69 43.69	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000015Blastula:Dome	1.72e4 1.72e4	42.44 42.44	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.72e4 1.72e4	42.29 42.29	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.74e4 1.74e4	41.85 41.85	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.82e4 1.82e4	39.11 39.11	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.00e4 2.00e4	32.92 32.92	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.14e4 2.14e4	28.39 28.39	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Vertebrata	4 genes ENSDARG00000014302 brinp2 ENSDARG00000061051 brinp3a.2 ENSDARG00000075352 CABZ01077605.1 ENSDARG00000078302 brinp1	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000076351.

Cross-references

Ensembl	ENSDARG00000076351 (brinp3a.1)
ZFIN	ZDB-GENE-080218-16 (brinp3a.1)
EMBL	CR388066
Uniprot/SPTREMBL	F1Q7Y2, F1Q7Y2_DANRE