D. rerio Gene: scaf4a - ENSDARG00000077093 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000077093
Namescaf4a
DescriptionSR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
OrganismDanio rerio (zebrafish)
Synonym(s)fa96d07, si:dkey-50p8.3, wu:fa96d07
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.43e3
  • 1.43e3
  • 1.90e3
95.23
  • 95.23
  • 93.64
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.75e3
  • 1.75e3
  • 1.88e3
94.15
  • 94.15
  • 93.71
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.77e3
  • 2.77e3
  • 3.14e3
  • 3.83e3
  • 3.85e3
  • 5.52e3
90.72
  • 90.72
  • 89.49
  • 87.17
  • 87.12
  • 81.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.27e3
  • 3.27e3
89.06
  • 89.06
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.67e3
  • 3.67e3
  • 6.09e3
87.70
  • 87.70
  • 79.59
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.37e3
  • 4.37e3
85.36
  • 85.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.64e3
  • 4.64e3
84.45
  • 84.45
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
  • 6.58e3
83.60
  • 83.60
  • 77.98
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.05e3
  • 5.05e3
83.09
  • 83.09
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
  • 9.53e3
82.70
  • 82.70
  • 68.10
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.18e3
  • 5.18e3
82.67
  • 82.67
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.49
  • 82.49
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.09
  • 82.09
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
81.53
  • 81.53
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.27
  • 81.27
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.66e3
  • 5.66e3
81.05
  • 81.05
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.77e3
  • 5.77e3
80.69
  • 80.69
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.02
  • 80.02
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
79.42
  • 79.42
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
79.23
  • 79.23
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.33e3
  • 6.33e3
78.81
  • 78.81
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.60
  • 78.60
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.73e3
  • 6.73e3
77.45
  • 77.45
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
76.03
  • 76.03
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.73
  • 75.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

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