D. rerio Gene: SH3TC1 - ENSDARG00000077330 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000077330
NameSH3TC1
DescriptionSH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
OrganismDanio rerio (zebrafish)
Synonym(s)flj20356
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
89.27
  • 89.27
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.79
  • 74.79
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.30
  • 74.30
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.50
  • 61.50
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.51e4
57.15
  • 57.15
  • 49.40
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.09
  • 53.09
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.53e4
  • 1.53e4
48.73
  • 48.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.87
  • 45.87
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.23
  • 45.23
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.79
  • 42.79
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.14
  • 42.14
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.74e4
  • 1.74e4
41.82
  • 41.82
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.83
  • 40.83
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.79e4
  • 1.79e4
  • 1.86e4
  • 1.91e4
  • 2.09e4
39.94
  • 39.94
  • 37.58
  • 35.97
  • 30.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.69
  • 36.69
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.05e4
  • 2.05e4
  • 2.09e4
31.49
  • 31.49
  • 29.95
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.35
  • 24.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000077330 (SH3TC1)
HGNCHGNC:26009 (SH3TC1)
Uniprot/SPTREMBLF1QHY2, F1QHY2_DANRE

Do not show this banner again