D. rerio Gene: PSIP1 (1 to many) - ENSDARG00000077405 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000077405
NamePSIP1 (1 to many)
Descriptionsi:ch211-116m6.3 [Source:ZFIN;Acc:ZDB-GENE-030131-3273]
OrganismDanio rerio (zebrafish)
Synonym(s)fc32f04, ledgf, p52, p75, psip2, wu:fc32f04
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.42e3
  • 1.42e3
95.26
  • 95.26
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.52e3
  • 1.52e3
  • 2.33e3
  • 3.19e3
  • 6.77e3
94.93
  • 94.93
  • 92.20
  • 89.32
  • 77.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.96e3
  • 1.96e3
  • 2.18e3
  • 2.19e3
  • 4.92e3
  • 5.76e3
93.44
  • 93.44
  • 92.71
  • 92.67
  • 83.52
  • 80.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.07e3
  • 2.07e3
93.09
  • 93.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
2.10e3
  • 2.10e3
  • 3.22e3
  • 3.27e3
  • 3.46e3
  • 3.79e3
  • 4.62e3
92.97
  • 92.97
  • 89.21
  • 89.04
  • 88.40
  • 87.31
  • 84.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.21e3
  • 2.21e3
92.60
  • 92.60
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
2.22e3
  • 2.22e3
  • 2.88e3
  • 4.08e3
  • 4.97e3
  • 5.30e3
  • 5.75e3
  • 5.85e3
  • 6.20e3
  • 6.93e3
  • 9.77e3
92.56
  • 92.56
  • 90.35
  • 86.34
  • 83.35
  • 82.24
  • 80.75
  • 80.41
  • 79.25
  • 76.81
  • 67.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
2.29e3
  • 2.29e3
  • 2.40e3
  • 4.20e3
  • 4.35e3
  • 4.45e3
  • 4.86e3
  • 5.22e3
  • 5.36e3
  • 5.49e3
  • 6.05e3
  • 6.46e3
  • 6.92e3
  • 8.17e3
  • 8.28e3
  • 1.42e4
  • 1.46e4
92.35
  • 92.35
  • 91.97
  • 85.95
  • 85.44
  • 85.09
  • 83.73
  • 82.51
  • 82.06
  • 81.63
  • 79.75
  • 78.39
  • 76.84
  • 72.64
  • 72.28
  • 52.43
  • 51.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.72
  • 90.72
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.23e3
  • 3.23e3
89.17
  • 89.17
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
  • 1.02e4
87.77
  • 87.77
  • 65.81
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
86.22
  • 86.22
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
  • 6.49e3
85.51
  • 85.51
  • 78.27
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
83.47
  • 83.47
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
  • 6.11e3
83.03
  • 83.03
  • 79.54
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.17e3
  • 5.17e3
82.70
  • 82.70
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
  • 1.01e4
81.60
  • 81.60
  • 66.22
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.25
  • 80.25
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.57e3
  • 6.57e3
77.99
  • 77.99
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
75.97
  • 75.97
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.26e3
  • 7.26e3
  • 1.09e4
  • 1.18e4
75.69
  • 75.69
  • 63.52
  • 60.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.78
  • 74.78
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.58
  • 74.58
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
74.37
  • 74.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.07e3
  • 8.07e3
72.97
  • 72.97
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.16e3
  • 8.16e3
72.69
  • 72.69
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.33e3
  • 8.33e3
72.10
  • 72.10
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.51e3
  • 8.51e3
71.50
  • 71.50
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.48
  • 71.48
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.71e3
  • 8.71e3
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.93
  • 61.93
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.77
  • 58.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000077405.

Cross-references

EnsemblENSDARG00000077405 (PSIP1 (1 to many))
HGNCHGNC:9527 (PSIP1 (1 to many))
ZFINZDB-GENE-030131-3273 (si:ch211-116m6.3)
EMBLCU905501
Uniprot/SPTREMBLE7FA82, E7FA82_DANRE, F1R255, F1R255_DANRE, F1R415, F1R415_DANRE, F8W309, F8W309_DANRE

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