D. rerio Gene: si:ch211-113a14.12 - ENSDARG00000077456 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000077456
Namesi:ch211-113a14.12
Descriptionsi:ch211-113a14.12 [Source:ZFIN;Acc:ZDB-GENE-121214-99]
OrganismDanio rerio (zebrafish)
Orthologs(s)77 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.36e3
  • 1.36e3
  • 2.38e3
95.46
  • 95.46
  • 92.05
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.38e3
  • 1.38e3
95.39
  • 95.39
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
2.47e3
  • 2.47e3
  • 1.58e4
91.74
  • 91.74
  • 46.95
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.18e3
  • 7.18e3
  • 1.48e4
75.96
  • 75.96
  • 50.34
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.25e3
  • 7.25e3
  • 7.96e3
  • 9.43e3
  • 1.48e4
  • 2.26e4
75.73
  • 75.73
  • 73.37
  • 68.42
  • 50.44
  • 24.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.37e3
  • 9.37e3
68.63
  • 68.63
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.12
  • 59.12
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.33e4
  • 1.33e4
55.40
  • 55.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.94
  • 50.94
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
  • 2.21e4
47.32
  • 47.32
  • 25.93
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.22
  • 45.22
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.93
  • 44.93
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.15
  • 44.15
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.30
  • 39.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.96
  • 31.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.85
  • 28.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.76
  • 27.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species77 genesCompare expression

Orthology information comes from OMA : ENSDARG00000077456.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi16 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000077456.

Cross-references

EnsemblENSDARG00000077456 (si:ch211-113a14.12)
ZFINZDB-GENE-050320-42 (zgc:110216), ZDB-GENE-121214-99 (si:ch211-113a14.12)
EMBLCR354435
Uniprot/SPTREMBLF1R9N6, F1R9N6_DANRE

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