D. rerio Gene: knop1 - ENSDARG00000077721 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000077721
Nameknop1
Descriptionlysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-202h22.6
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
94.63
  • 94.63
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
2.40e3
  • 2.40e3
  • 3.29e3
91.97
  • 91.97
  • 88.98
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.70e3
  • 2.70e3
  • 1.09e4
90.96
  • 90.96
  • 63.55
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
88.60
  • 88.60
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.79e3
  • 3.79e3
87.31
  • 87.31
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.93
  • 86.93
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
4.04e3
  • 4.04e3
  • 4.09e3
  • 4.49e3
  • 5.80e3
  • 6.88e3
86.46
  • 86.46
  • 86.30
  • 84.95
  • 80.58
  • 76.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.00e3
  • 5.00e3
  • 7.89e3
83.26
  • 83.26
  • 73.58
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.79e3
  • 5.79e3
  • 8.76e3
80.62
  • 80.62
  • 70.68
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
78.10
  • 78.10
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.97
  • 77.97
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.51
  • 77.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.11
  • 77.11
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.00e3
  • 7.00e3
  • 7.20e3
76.57
  • 76.57
  • 75.89
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.38e3
  • 7.38e3
75.30
  • 75.30
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.61e3
  • 7.61e3
74.53
  • 74.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.26
  • 74.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.25
  • 74.25
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.89e3
  • 7.89e3
73.60
  • 73.60
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.48e3
  • 8.48e3
71.60
  • 71.60
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.64e3
  • 8.64e3
71.08
  • 71.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.67e3
  • 8.67e3
70.95
  • 70.95
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.41e3
  • 9.41e3
68.49
  • 68.49
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
64.19
  • 64.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000077721.

Cross-references

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