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D. rerio Gene: vmhcl - ENSDARG00000079782 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000079782
Namevmhcl
Descriptionventricular myosin heavy chain-like [Source:ZFIN;Acc:ZDB-GENE-061027-393]
OrganismDanio rerio (zebrafish)
Synonym(s)myh1, zgc:113832, zgc:152732
Orthologs(s)36 orthologs
Paralog(s)21 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.54
  • 7.54
  • 1.49e4
99.98
  • 99.98
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
24.4
  • 24.4
  • 101
  • 5.75e3
  • 9.96e3
  • 1.07e4
  • 1.10e4
99.92
  • 99.92
  • 99.66
  • 80.76
  • 66.65
  • 64.28
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
577
  • 577
  • 1.21e4
98.07
  • 98.07
  • 59.62
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
4.60e3
  • 4.60e3
  • 4.99e3
  • 5.72e3
  • 8.15e3
  • 1.16e4
  • 1.56e4
  • 1.69e4
  • 1.78e4
  • 1.78e4
84.59
  • 84.59
  • 83.30
  • 80.86
  • 72.71
  • 61.11
  • 47.77
  • 43.41
  • 40.40
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.02e3
  • 7.02e3
  • 8.33e3
  • 1.14e4
76.50
  • 76.50
  • 72.10
  • 61.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000036Larval:Day 4
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.02e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
75.00
  • 75.00
  • 66.65
  • 65.77
  • 64.98
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.44
  • 71.44
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
8.60e3
  • 8.60e3
  • 1.03e4
  • 1.16e4
  • 1.16e4
  • 1.29e4
  • 1.38e4
  • 1.49e4
  • 1.50e4
  • 1.60e4
  • 1.61e4
  • 1.62e4
  • 1.62e4
  • 1.63e4
71.21
  • 71.21
  • 65.61
  • 61.15
  • 61.12
  • 56.73
  • 53.80
  • 50.20
  • 49.81
  • 46.28
  • 46.00
  • 45.83
  • 45.76
  • 45.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.57e3
  • 9.57e3
67.96
  • 67.96
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.08e4
66.65
  • 66.65
  • 65.37
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
64.69
  • 64.69
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.08e4
  • 1.08e4
  • 1.12e4
63.87
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.61
  • 59.61
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.50
  • 58.50
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.17
  • 57.17
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.78
  • 52.78
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
  • 1.92e4
51.38
  • 51.38
  • 35.58
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.84
  • 47.84
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
  • 1.65e4
45.29
  • 45.29
  • 44.67
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.10
  • 45.10
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.65
  • 44.65
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.69e4
  • 1.69e4
  • 1.75e4
43.58
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.23
  • 43.23
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.91
  • 40.91
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.93
  • 35.93
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.00e4
  • 2.00e4
33.10
  • 33.10
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.52
  • 27.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species26 genesCompare expression
Bilateria24 species36 genesCompare expression

Orthology information comes from OMA : ENSDARG00000079782.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii3 genesCompare expression
Euteleostomi6 genesCompare expression
Chordata16 genesCompare expression
Bilateria17 genesCompare expression
Eukaryota21 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000079782.

Cross-references

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