D. rerio Gene: cdk1 - ENSDARG00000087554 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000087554
Namecdk1
Descriptioncyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cdc2, cdc2 {eco:0000313|embl:aah79527.1,gn eco:0000313|zfin:zdb-gene-010320-1}, wu:fc30e01, zgc:92032
Orthologs(s)25 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
509
  • 509
  • 1.47e4
98.30
  • 98.30
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
613
  • 613
97.95
  • 97.95
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
831
  • 831
  • 1.34e3
  • 1.48e3
  • 1.53e3
  • 1.57e3
  • 1.84e3
  • 1.94e3
  • 2.91e3
  • 3.48e3
  • 3.59e3
97.22
  • 97.22
  • 95.50
  • 95.05
  • 94.87
  • 94.75
  • 93.84
  • 93.49
  • 90.27
  • 88.36
  • 87.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
845
  • 845
  • 1.28e4
97.17
  • 97.17
  • 57.26
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.06e3
  • 1.06e3
  • 1.49e3
  • 1.95e3
  • 2.00e3
  • 2.02e3
  • 3.24e3
96.44
  • 96.44
  • 95.02
  • 93.49
  • 93.29
  • 93.24
  • 89.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
  • 1.37e4
95.55
  • 95.55
  • 54.13
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.05
  • 95.05
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.48e3
  • 1.48e3
  • 1.57e3
  • 1.66e3
  • 1.68e3
  • 1.74e3
  • 1.84e3
  • 1.99e3
  • 2.38e3
  • 2.82e3
  • 3.91e3
  • 4.65e3
  • 5.12e3
  • 5.75e3
  • 8.41e3
  • 1.35e4
  • 1.49e4
  • 1.50e4
95.05
  • 95.05
  • 94.73
  • 94.44
  • 94.37
  • 94.19
  • 93.85
  • 93.32
  • 92.02
  • 90.56
  • 86.93
  • 84.43
  • 82.85
  • 80.75
  • 71.85
  • 54.65
  • 50.25
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.69e3
  • 1.69e3
  • 1.89e3
  • 5.19e3
94.35
  • 94.35
  • 93.67
  • 82.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.73e3
  • 1.73e3
94.23
  • 94.23
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.81e3
  • 1.81e3
  • 1.56e4
93.94
  • 93.94
  • 47.91
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.39
  • 93.39
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.01e3
  • 2.01e3
93.28
  • 93.28
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.67
  • 92.67
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.69e3
  • 2.69e3
  • 1.63e4
90.98
  • 90.98
  • 45.33
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.25e3
  • 3.25e3
89.10
  • 89.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.34e3
  • 3.34e3
88.82
  • 88.82
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
3.51e3
  • 3.51e3
  • 4.89e3
  • 5.10e3
  • 5.89e3
  • 5.95e3
88.23
  • 88.23
  • 83.62
  • 82.92
  • 80.29
  • 80.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.63e3
  • 3.63e3
87.84
  • 87.84
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.66e3
  • 3.66e3
87.75
  • 87.75
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.84e3
  • 3.84e3
  • 4.20e3
  • 5.48e3
87.15
  • 87.15
  • 85.94
  • 81.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.11e3
  • 4.11e3
86.24
  • 86.24
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.51
  • 84.51
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.54e3
  • 5.54e3
81.44
  • 81.44
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.25
  • 80.25
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.34e3
  • 7.34e3
  • 1.07e4
75.43
  • 75.43
  • 64.12
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.18
  • 74.18
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.26e3
  • 8.26e3
72.36
  • 72.36
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.33e3
  • 8.33e3
72.10
  • 72.10
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.08e4
  • 1.08e4
63.83
  • 63.83
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.50e4
59.78
  • 59.78
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.77
  • 56.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.12
  • 50.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000087554.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta2 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000087554.

Cross-references

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