D. rerio Gene: cdk4 - ENSDARG00000087937 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000087937
Namecdk4
Descriptioncyclin-dependent kinase 4 [Source:ZFIN;Acc:ZDB-GENE-060929-974]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153726
Orthologs(s)22 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
2.85e3
  • 2.85e3
  • 6.95e3
  • 7.27e3
  • 7.92e3
  • 8.87e3
90.47
  • 90.47
  • 76.75
  • 75.65
  • 73.47
  • 70.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
  • 7.67e3
90.43
  • 90.43
  • 74.32
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
88.45
  • 88.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.74e3
  • 3.74e3
87.49
  • 87.49
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.72
  • 85.72
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
84.72
  • 84.72
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.27
  • 82.27
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.72
  • 79.72
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.48e3
  • 6.48e3
  • 6.53e3
78.31
  • 78.31
  • 78.13
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.81e3
  • 6.81e3
77.19
  • 77.19
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
76.44
  • 76.44
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.31e3
  • 7.31e3
75.53
  • 75.53
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
7.55e3
  • 7.55e3
  • 9.64e3
74.72
  • 74.72
  • 67.73
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.62e3
  • 7.62e3
74.50
  • 74.50
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
74.12
  • 74.12
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.09e3
  • 8.09e3
72.91
  • 72.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.21e3
  • 9.21e3
  • 1.00e4
69.17
  • 69.17
  • 66.45
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.46e3
  • 9.46e3
68.32
  • 68.32
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.76
  • 66.76
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
  • 1.24e4
64.32
  • 64.32
  • 58.42
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.75
  • 56.75
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.09
  • 56.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species16 genesCompare expression
Bilateria21 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000087937.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000087937.

Cross-references

EnsemblENSDARG00000087937 (cdk4)
ZFINZDB-GENE-060929-974 (cdk4)
EMBLCU633839
Uniprot/SPTREMBLF1RDQ7, F1RDQ7_DANRE

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