D. rerio Gene: slc6a11b - ENSDARG00000087981 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000087981
Nameslc6a11b
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 11b [Source:ZFIN;Acc:ZDB-GENE-121116-2]
OrganismDanio rerio (zebrafish)
Orthologs(s)2 orthologs
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
834
  • 834
97.21
  • 97.21
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.86e3
  • 1.86e3
  • 3.21e3
  • 9.09e3
  • 1.22e4
  • 1.33e4
93.77
  • 93.77
  • 89.27
  • 69.56
  • 59.05
  • 55.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.22e3
  • 2.22e3
  • 5.29e3
92.57
  • 92.57
  • 82.29
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.99e3
  • 2.99e3
  • 1.01e4
89.98
  • 89.98
  • 66.02
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.51e3
  • 5.51e3
81.56
  • 81.56
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
78.50
  • 78.50
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.37
  • 72.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.40
  • 42.40
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.76e4
  • 1.76e4
41.00
  • 41.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.79
  • 40.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.21
  • 40.21
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.80e4
  • 1.80e4
39.82
  • 39.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000087981.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia7 genesCompare expression
Bilateria11 genesCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000087981.

Cross-references

EnsemblENSDARG00000087981 (slc6a11b)
ZFINZDB-GENE-121116-2 (slc6a11b)
Uniprot/SPTREMBLE7F7L8, E7F7L8_DANRE

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