D. rerio Gene: mhc1zfa - ENSDARG00000088022 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000088022
Namemhc1zfa
Descriptionmajor histocompatibility complex class I ZFA [Source:ZFIN;Acc:ZDB-GENE-130206-9]
OrganismDanio rerio (zebrafish)
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.12e3
  • 6.12e3
79.51
  • 79.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.52
  • 66.52
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.85
  • 61.85
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.83
  • 61.83
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.77
  • 58.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.20
  • 52.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.48e4
  • 1.48e4
50.35
  • 50.35
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.72
  • 46.72
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.54
  • 43.54
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.42
  • 43.42
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.75e4
  • 1.75e4
41.37
  • 41.37
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.12
  • 41.12
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.83
  • 40.83
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.21
  • 40.21
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.88
  • 39.88
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.39
  • 37.39
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.77
  • 33.77
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
2.15e4
  • 2.15e4
  • 2.45e4
  • 2.60e4
  • 2.77e4
27.96
  • 27.96
  • 17.85
  • 12.97
  • 7.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.23e4
  • 2.23e4
  • 2.50e4
25.24
  • 25.24
  • 16.23
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi5 genesCompare expression
Clupeocephala6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000088022.

Cross-references

EnsemblENSDARG00000088022 (mhc1zfa)
ZFINZDB-GENE-130206-9 (mhc1zfa)
EMBLCABZ01089980, KC607855
Uniprot/SPTREMBLF1Q8P0, F1Q8P0_DANRE

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