D. rerio Gene: si:ch211-201o1.1 - ENSDARG00000088689 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000088689
Namesi:ch211-201o1.1
Descriptionsi:ch211-201o1.1 [Source:ZFIN;Acc:ZDB-GENE-120709-60]
OrganismDanio rerio (zebrafish)
Paralog(s)12 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.26
  • 82.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
78.58
  • 78.58
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
72.82
  • 72.82
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.91e3
  • 8.91e3
  • 1.69e4
70.17
  • 70.17
  • 43.25
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
69.01
  • 69.01
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.83e3
  • 9.83e3
67.10
  • 67.10
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.90e3
  • 9.90e3
66.84
  • 66.84
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.46
  • 64.46
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.05
  • 63.05
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.02
  • 61.02
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.86
  • 60.86
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.41
  • 60.41
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.51
  • 59.51
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.93
  • 54.93
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e4
  • 1.66e4
44.39
  • 44.39
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.31
  • 42.31
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
2.00e4
  • 2.00e4
  • 2.15e4
  • 2.19e4
  • 2.23e4
33.06
  • 33.06
  • 28.09
  • 26.67
  • 25.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.07e4
  • 2.07e4
  • 2.14e4
30.77
  • 30.77
  • 28.21
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata12 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000088689.

Cross-references

EnsemblENSDARG00000088689 (si:ch211-201o1.1)
ZFINZDB-GENE-120709-60 (si:ch211-201o1.1)
Uniprot/SPTREMBLK7DYM1, K7DYM1_DANRE

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