D. rerio Gene: ppm1lb - ENSDARG00000089641 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000089641
Nameppm1lb
Descriptionprotein phosphatase, Mg2+/Mn2+ dependent, 1Lb [Source:ZFIN;Acc:ZDB-GENE-060929-136]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153235
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.53
  • 70.53
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
9.40e3
  • 9.40e3
68.52
  • 68.52
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.83e3
  • 9.83e3
67.09
  • 67.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.93e3
  • 9.93e3
  • 1.68e4
66.74
  • 66.74
  • 43.79
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
66.64
  • 66.64
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.04e4
  • 1.04e4
  • 1.31e4
65.30
  • 65.30
  • 56.28
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
  • 1.80e4
61.60
  • 61.60
  • 39.71
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.22
  • 58.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.86
  • 56.86
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.47
  • 56.47
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.70
  • 54.70
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.08
  • 53.08
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.41e4
  • 1.41e4
  • 1.58e4
52.68
  • 52.68
  • 46.97
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
51.95
  • 51.95
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.52e4
  • 1.52e4
  • 1.52e4
  • 1.54e4
  • 1.67e4
  • 1.68e4
49.03
  • 49.03
  • 49.00
  • 48.31
  • 44.17
  • 43.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.63
  • 46.63
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.45
  • 46.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.39
  • 46.39
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.13
  • 46.13
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.73e4
  • 1.73e4
41.96
  • 41.96
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.01
  • 34.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Opisthokonta7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000089641.

Cross-references

EnsemblENSDARG00000089641 (ppm1lb)
ZFINZDB-GENE-060929-136 (ppm1lb)
EMBLCR478286
Uniprot/SPTREMBLF1QD96, F1QD96_DANRE

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