D. rerio Gene: hbbe1.1 - ENSDARG00000089963 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000089963
Namehbbe1.1
Descriptionhemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
OrganismDanio rerio (zebrafish)
Synonym(s)beta e1 globin, betae1globin, hbbe1, hbbe1.2gn, mgc173646gn, ottdarp00000001844gn, si:busm1-118j2.5gn, si:by119c3.2, si:ch211-5k11.12gn, zgc:109871

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
49.0
  • 49.0
  • 83.1
  • 83.7
  • 161
  • 201
99.83776
  • 99.83776
  • 99.72258
  • 99.72051
  • 99.45921
  • 99.32388
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
228
  • 228
99.23185
  • 99.23185
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
236
  • 236
  • 2.19e4
99.20446
  • 99.20446
  • 25.89188
AEIR
  • AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
3.12e3
  • 3.12e3
  • 8.46e3
  • 8.46e3
  • 8.88e3
  • 1.11e4
  • 1.11e4
  • 1.48e4
89.47030
  • 89.47030
  • 71.42518
  • 71.41842
  • 69.98817
  • 62.49830
  • 62.49830
  • 49.99155
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000562nucleate erythrocyte
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000038Larval:Day 6
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
3.70e3
  • 3.70e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 1.11e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
87.50170
  • 87.50170
  • 75.00167
  • 75.00167
  • 75.00167
  • 75.00167
  • 75.00167
  • 75.00167
  • 62.49830
  • 50.00169
  • 50.00169
  • 50.00169
  • 50.00000
  • 50.00000
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000764erythroid lineage cell
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
3.70e3
  • 3.70e3
  • 4.93e3
  • 7.40e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
87.50170
  • 87.50170
  • 83.33503
  • 74.99998
  • 66.66666
  • 50.00169
  • 50.00169
  • 50.00169
  • 50.00000
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000006ball
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
9.86e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
66.66666
  • 66.66666
  • 50.00169
  • 50.00169
  • 50.00000
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003061blood island
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.86e3
  • 9.86e3
  • 1.48e4
66.66328
  • 66.66328
  • 50.00000
AEIR
  • AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000033Hatching:Long-pec
9.86e3
  • 9.86e3
66.66328
  • 66.66328
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.44373
  • 65.44373
AEIR
  • AEIR
UBERON:0009910posterior lateral plate mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
1.06e4
  • 1.06e4
  • 1.48e4
64.28063
  • 64.28063
  • 50.00000
AEIR
  • AEIR
  • AEIR
UBERON:0018549ventral wall of dorsal aorta
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.23e4
  • 1.23e4
  • 1.48e4
58.32826
  • 58.32826
  • 49.99662
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.19135
  • 52.19135
AEIR
  • AEIR
UBERON:0002201vasculature of trunk
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0010204tail vasculature
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
CL:0000765erythroblast
  • ZFS:0000028Segmentation:26+ somites
1.48e4
  • 1.48e4
50.00000
  • 50.00000
AEIR
  • AEIR
CL:0000837hematopoietic multipotent progenitor cell
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
50.00000
  • 50.00000
AEIR
  • AEIR
CL:0000037hematopoietic stem cell
  • ZFS:0000037Larval:Day 5
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
ZFA:0005040posterior lateral mesoderm (Danio)
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
49.99324
  • 49.99324
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.68651
  • 49.68651
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.38570
  • 49.38570
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.40753
  • 45.40753
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
41.71328
  • 41.71328
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
36.91042
  • 36.91042
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.43737
  • 32.43737
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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