Gene: ppp3r1a - ENSDARG00000092659 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000092659
Name	ppp3r1a
Description	protein phosphatase 3, regulatory subunit B, alpha a [Source:ZFIN;Acc:ZDB-GENE-081113-3]
Organism	Danio rerio (zebrafish)
Synonym(s)	canb1, ppp3r1, si:ch211-274c22.8
Orthologs(s)	24 orthologs
Paralog(s)	49 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	587 587	98.04 98.04	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	606 606	97.98 97.98	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	1.01e3 1.01e3 1.33e3 2.98e3 6.08e3 6.42e3	96.61 96.61 95.54 90.02 79.64 78.50	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.23e3 1.23e3 4.88e3	95.88 95.88 83.67	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	2.32e3 2.32e3	92.24 92.24	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	2.55e3 2.55e3	91.46 91.46	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	3.03e3 3.03e3 5.73e3	89.85 89.85 80.80	AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	3.29e3 3.29e3	89.00 89.00	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	3.58e3 3.58e3	88.02 88.02	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	3.72e3 3.72e3	87.56 87.56	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	4.00e3 4.00e3	86.61 86.61	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	4.66e3 4.66e3	84.40 84.40	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	4.76e3 4.76e3	84.07 84.07	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	5.53e3 5.53e3	81.49 81.49	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	5.66e3 5.66e3 5.84e3	81.05 81.05 80.44	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	5.96e3 5.96e3	80.04 80.04	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	6.05e3 6.05e3	79.75 79.75	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	6.19e3 6.19e3	79.29 79.29	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	6.31e3 6.31e3 8.32e3	78.88 78.88 72.13	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	7.57e3 7.57e3	74.67 74.67	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	7.82e3 7.82e3 7.89e3	73.83 73.83 73.58	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	8.44e3 8.44e3	71.74 71.74	AEIR AEIR
UBERON:0000203	pallium	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	9.96e3 9.96e3	66.67 66.67	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.05e4 1.05e4	64.72 64.72	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.06e4 1.06e4	64.44 64.44	AEIR AEIR
UBERON:0001893	telencephalon	[+] 2 stages ZFS:0000035Larval:Protruding-mouth ZFS:0000029Pharyngula:Prim-5	1.07e4 1.07e4 1.31e4	64.28 64.28 56.22	AEIR AEIR AEIR
UBERON:0002264	olfactory bulb	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.12e4 1.12e4	62.50 62.50	AEIR AEIR
UBERON:0002037	cerebellum	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth ZFS:0000029Pharyngula:Prim-5	1.17e4 1.17e4 1.24e4 1.25e4	60.70 60.70 58.33 58.31	AEIR AEIR AEIR AEIR
UBERON:0001945	superior colliculus	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.24e4 1.24e4	58.32 58.32	AEIR AEIR
UBERON:0001905	pineal body	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.28e4 1.28e4	57.14 57.14	AEIR AEIR
UBERON:0001894	diencephalon	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000035Larval:Protruding-mouth ZFS:0000033Hatching:Long-pec	1.31e4 1.31e4 1.36e4 1.41e4	56.22 56.22 54.53 52.75	AEIR AEIR AEIR AEIR
UBERON:0001891	midbrain	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.34e4 1.34e4	54.97 54.97	AEIR AEIR
UBERON:0003936	postoptic commissure	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.49e4 1.49e4	50.00 50.00	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	12 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Felis catus (cat) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	12 genes ENSG00000221823 PPP3R1 ENSMUSG00000033953 Ppp3r1 ENSPTRG00000041941 ENSRNOG00000057321 Rn50_14_1002.4 ENSBTAG00000010619 ENSECAG00000009627 ENSOCUG00000027562 ENSFCAG00000028482 ENSEEUG00000004271 PPP3R2 ENSOANG00000008386 ENSGALG00000023648 PPP3R1 ENSXETG00000017355 ppp3r1	Compare expression	[+]
Bilateria	19 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Felis catus (cat) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	24 genes ENSG00000221823 PPP3R1 ENSMUSG00000033953 Ppp3r1 FBgn0010014 CanB FBgn0015614 CanB2 WBGene00000554 cnb-1 ENSPTRG00000041941 ENSRNOG00000057321 Rn50_14_1002.4 ENSBTAG00000010619 ENSECAG00000009627 ENSOCUG00000027562 ENSFCAG00000028482 ENSEEUG00000004271 PPP3R2 ENSOANG00000008386 ENSGALG00000023648 PPP3R1 ENSXETG00000017355 ppp3r1 FBgn0090233 GF13200 FBgn0096764 GF19757 FBgn0133839 GI11077 FBgn0142727 GI19990 FBgn0187024 GD15356 FBgn0201983 GJ14779 FBgn0208372 GJ21239 FBgn0233925 GE16397 FBgn0236507 GE19147	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000092659.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000069360 ppp3r1b	Compare expression	[+]
Opisthokonta	3 genes ENSDARG00000025788 chp2 ENSDARG00000052859 chp1 ENSDARG00000069360 ppp3r1b	Compare expression	[+]
Eukaryota	49 genes ENSDARG00000008030 myl9b ENSDARG00000008494 myl6 ENSDARG00000009637 rcvrn3 ENSDARG00000010454 guca1a ENSDARG00000011334 ncaldb ENSDARG00000011400 tnnc1a ENSDARG00000011519 myl4 ENSDARG00000011825 cetn3 ENSDARG00000014196 myl1 ENSDARG00000015050 calm3a ENSDARG00000017441 mylz3 ENSDARG00000018397 hpca ENSDARG00000019096 myl7 ENSDARG00000019902 rcvrn2 ENSDARG00000021811 calm1a ENSDARG00000022763 hpcal1 ENSDARG00000023228 vsnl1a ENSDARG00000025326 myl12.2 ENSDARG00000025788 chp2 ENSDARG00000030758 guca1c ENSDARG00000031427 calm2a ENSDARG00000032976 cmlc1 ENSDARG00000033738 zgc:153867 ENSDARG00000034187 calm1b ENSDARG00000037539 tnnc1b ENSDARG00000038123 myl9a ENSDARG00000041215 cetn4 ENSDARG00000042245 myl13 ENSDARG00000044053 vsnl1b ENSDARG00000044629 guca1d ENSDARG00000052223 rcvrna ENSDARG00000052859 chp1 ENSDARG00000053424 myl2b ENSDARG00000054186 ncs1b ENSDARG00000055229 ncs1a ENSDARG00000059257 RCVRN (1 to many) ENSDARG00000062592 myl10 ENSDARG00000069360 ppp3r1b ENSDARG00000070491 hpcal4 ENSDARG00000070688 ncalda ENSDARG00000070835 tnnc2 ENSDARG00000074057 calm3b ENSDARG00000074323 efcab2 ENSDARG00000095002 TNNC2 (1 to many) ENSDARG00000099712 MYL3 ENSDARG00000099766 myl12.1 ENSDARG00000100825 calm3a ENSDARG00000101510 cetn2 ENSDARG00000104722 MYL2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000092659.

Cross-references

Ensembl	ENSDARG00000092659 (ppp3r1a)
ZFIN	ZDB-GENE-081113-3 (ppp3r1a)
EMBL	BX323887, KT023302
Uniprot/SPTREMBL	E9QG20, E9QG20_DANRE