Gene: si:ch211-250k18.6 - ENSDARG00000093964 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000093964
Name	si:ch211-250k18.6
Description	si:ch211-250k18.6 [Source:ZFIN;Acc:ZDB-GENE-070912-245]
Organism	Danio rerio (zebrafish)
Paralog(s)	12 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	6.76e3 6.76e3	77.35 77.35	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	8.60e3 8.60e3	71.22 71.22	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.26e4 1.26e4	57.73 57.73	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.26e4 1.26e4	57.72 57.72	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.37e4 1.37e4	54.06 54.06	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.38e4 1.38e4	53.78 53.78	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.40e4 1.40e4	53.05 53.05	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.58e4 1.58e4	46.99 46.99	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.63e4 1.63e4	45.55 45.55	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	1.64e4 1.64e4	45.13 45.13	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	1.82e4 1.82e4	39.05 39.05	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.86e4 1.86e4	37.88 37.88	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.88e4 1.88e4	36.91 36.91	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.02e4 2.02e4	32.44 32.44	AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage	2.08e4 2.08e4 2.21e4 2.21e4 2.36e4	30.25 30.25 26.14 26.03 21.12	AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	2.27e4 2.27e4 2.44e4	24.06 24.06 18.13	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	12 genes ENSDARG00000068453 CABZ01112732.1 ENSDARG00000068749 si:ch211-250k18.5 ENSDARG00000074546 si:ch211-213a13.11 ENSDARG00000078002 si:dkey-13n15.11 ENSDARG00000086703 si:dkey-126g1.7 ENSDARG00000088689 si:ch211-201o1.1 ENSDARG00000088870 si:dkey-265e15.5 ENSDARG00000090192 si:dkey-16p6.1 ENSDARG00000095665 si:ch211-191a16.2 ENSDARG00000102475 si:dkey-3p4.1 ENSDARG00000103143 si:dkey-19c16.12 ENSDARG00000105266 si:dkey-16p6.1	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000093964.

Cross-references

Ensembl	ENSDARG00000093964 (si:ch211-250k18.6)
ZFIN	ZDB-GENE-070912-245 (si:ch211-250k18.6)
EMBL	BX927329
Uniprot/SPTREMBL	B0S8F7, B0S8F7_DANRE