D. rerio Gene: pou3f3b - ENSDARG00000095896 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000095896
Namepou3f3b
DescriptionPOU class 3 homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-980526-140]
OrganismDanio rerio (zebrafish)
Synonym(s)b3djh8, brn-1.0, fb92g06, p31366, p79744, pou1, pou23, q6phh6, wu:fb92g06, zfpou1, zp23, zp23pou

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.83e3
  • 1.83e3
  • 1.99e3
  • 2.41e3
  • 2.50e3
  • 3.12e3
  • 3.39e3
  • 4.99e3
  • 7.18e3
  • 9.77e3
  • 1.36e4
93.87
  • 93.87
  • 93.35
  • 91.92
  • 91.63
  • 89.57
  • 88.64
  • 83.29
  • 75.95
  • 67.30
  • 54.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.94e3
  • 1.94e3
  • 1.39e4
93.49
  • 93.49
  • 53.29
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.87e3
  • 3.87e3
87.05
  • 87.05
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000022Gastrula:Bud
3.98e3
  • 3.98e3
  • 5.01e3
  • 5.25e3
  • 5.69e3
  • 9.06e3
  • 1.04e4
  • 1.23e4
  • 1.35e4
  • 1.39e4
  • 1.40e4
  • 1.41e4
  • 1.78e4
86.68
  • 86.68
  • 83.22
  • 82.42
  • 80.94
  • 69.66
  • 65.07
  • 58.79
  • 54.91
  • 53.35
  • 53.03
  • 52.86
  • 40.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.22e3
  • 4.22e3
  • 6.09e3
85.88
  • 85.88
  • 79.62
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
6.18e3
  • 6.18e3
  • 6.52e3
  • 7.41e3
79.30
  • 79.30
  • 78.18
  • 75.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.57e3
  • 6.57e3
78.01
  • 78.01
AEIR
  • AEIR
UBERON:0009841upper rhombic lip
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
9.94e3
  • 9.94e3
  • 1.24e4
  • 1.29e4
66.72
  • 66.72
  • 58.44
  • 56.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
  • 1.26e4
  • 1.41e4
  • 1.49e4
64.98
  • 64.98
  • 57.87
  • 52.75
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.08
  • 64.08
AEIR
  • AEIR
UBERON:0009622pronephric proximal straight tubule
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.15e4
  • 1.15e4
  • 1.27e4
61.63
  • 61.63
  • 57.47
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.17e4
  • 1.17e4
  • 1.35e4
  • 1.42e4
60.68
  • 60.68
  • 54.73
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.60
  • 60.60
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.42e4
59.98
  • 59.98
  • 58.31
  • 52.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.23e4
  • 1.23e4
58.85
  • 58.85
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.33e4
56.22
  • 56.22
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.47e4
  • 1.47e4
50.62
  • 50.62
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007308pronephric distal early tubule
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.68
  • 48.68
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.25
  • 46.25
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.65e4
  • 1.65e4
  • 1.75e4
44.88
  • 44.88
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.63
  • 44.63
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.80e4
  • 1.80e4
39.84
  • 39.84
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.50
  • 38.50
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.64
  • 28.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
26.96
  • 26.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC056320, BC056549, BC163489, D13045, Y07907
EnsemblENSDARG00000095896 (pou3f3b)
Uniprot/SWISSPROTP3F3B_DANRE, P79745
ZFINZDB-GENE-980526-140 (pou3f3b)

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