D. rerio Gene: TRIM35 (1 to many) - ENSDARG00000095913 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000095913
NameTRIM35 (1 to many)
Descriptionsi:ch1073-324l1.1 [Source:ZFIN;Acc:ZDB-GENE-110407-9]
OrganismDanio rerio (zebrafish)
Synonym(s)hls5, kiaa1098, mair
Orthologs(s)2 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.77e3
  • 6.77e3
77.34
  • 77.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
70.07
  • 70.07
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.78
  • 64.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.31
  • 62.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.27
  • 62.27
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.39
  • 61.39
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.42
  • 58.42
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.07
  • 55.07
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.00
  • 53.00
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.43e4
  • 1.43e4
  • 1.65e4
52.06
  • 52.06
  • 44.63
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
  • 1.62e4
50.46
  • 50.46
  • 45.65
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.15
  • 50.15
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.10
  • 49.10
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
1.60e4
  • 1.60e4
  • 1.68e4
  • 1.82e4
  • 1.86e4
  • 1.93e4
46.40
  • 46.40
  • 43.67
  • 39.22
  • 37.75
  • 35.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.66e4
  • 1.66e4
  • 1.68e4
44.31
  • 44.31
  • 43.84
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.14
  • 44.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.56
  • 43.56
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.66
  • 41.66
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.80e4
  • 1.80e4
39.65
  • 39.65
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.87e4
  • 1.87e4
  • 1.91e4
37.35
  • 37.35
  • 35.93
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.69
  • 31.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000095913.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi25 genesCompare expression
Clupeocephala26 genesCompare expression
Euteleostomi28 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000095913.

Cross-references

EnsemblENSDARG00000095913 (TRIM35 (1 to many))
HGNCHGNC:16285 (TRIM35 (1 to many))
ZFINZDB-GENE-110407-9 (si:ch1073-324l1.1)
EMBLCU861903
Uniprot/SPTREMBLF1Q6W7, F1Q6W7_DANRE, F8W3P8, F8W3P8_DANRE

Do not show this banner again