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D. rerio Gene: slx1b - ENSDARG00000098605 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000098605
Nameslx1b
DescriptionSLX1 homolog B, structure-specific endonuclease subunit [Source:ZFIN;Acc:ZDB-GENE-130530-826]
OrganismDanio rerio (zebrafish)
Synonym(s)zmp:0000000823
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.98e3
  • 1.98e3
  • 4.29e3
  • 5.03e3
  • 5.69e3
  • 9.35e3
93.37
  • 93.37
  • 85.64
  • 83.16
  • 80.94
  • 68.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.67
  • 91.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
91.45
  • 91.45
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
4.00e3
  • 4.00e3
  • 6.56e3
  • 9.18e3
  • 9.86e3
  • 1.06e4
  • 1.08e4
86.61
  • 86.61
  • 78.02
  • 69.25
  • 66.98
  • 64.53
  • 63.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.07e3
  • 4.07e3
86.38
  • 86.38
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.56e3
  • 4.56e3
84.73
  • 84.73
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.05
  • 83.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.98
  • 82.98
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
5.97e3
  • 5.97e3
  • 1.25e4
  • 1.37e4
80.01
  • 80.01
  • 58.16
  • 54.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
79.23
  • 79.23
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.24e3
  • 6.24e3
79.11
  • 79.11
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.32e3
  • 6.32e3
  • 8.77e3
  • 8.81e3
  • 8.81e3
  • 9.06e3
  • 1.21e4
  • 1.28e4
  • 1.29e4
  • 1.45e4
  • 1.50e4
78.84
  • 78.84
  • 70.64
  • 70.49
  • 70.49
  • 69.68
  • 59.62
  • 57.05
  • 56.73
  • 51.61
  • 49.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.52e3
  • 6.52e3
78.19
  • 78.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
7.67e3
  • 7.67e3
  • 9.94e3
  • 1.01e4
  • 1.04e4
  • 1.12e4
  • 1.20e4
  • 1.21e4
  • 1.25e4
  • 1.26e4
  • 1.27e4
  • 1.29e4
  • 1.31e4
74.33
  • 74.33
  • 66.73
  • 66.08
  • 65.04
  • 62.52
  • 59.98
  • 59.35
  • 58.28
  • 57.85
  • 57.60
  • 56.97
  • 56.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
  • 9.88e3
73.38
  • 73.38
  • 66.93
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.23e3
  • 8.23e3
  • 1.07e4
72.43
  • 72.43
  • 64.11
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.45
  • 71.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.55e3
  • 8.55e3
71.36
  • 71.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.89e3
  • 8.89e3
70.25
  • 70.25
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.23e3
  • 9.23e3
69.09
  • 69.09
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.40e4
65.81
  • 65.81
  • 53.22
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.29
  • 64.29
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.07e4
  • 1.07e4
  • 1.30e4
  • 1.61e4
64.08
  • 64.08
  • 56.53
  • 46.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.39
  • 63.39
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.10e4
  • 1.10e4
63.09
  • 63.09
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.18e4
  • 1.18e4
60.55
  • 60.55
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.21e4
  • 1.21e4
59.35
  • 59.35
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.14
  • 59.14
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.37e4
  • 1.37e4
54.09
  • 54.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi13 species14 genesCompare expression
Bilateria17 species18 genesCompare expression

Orthology information comes from OMA : ENSDARG00000098605.

Cross-references

EnsemblENSDARG00000098605 (slx1b)
ZFINZDB-GENE-130530-826 (slx1b)

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