D. rerio Gene: pds5b - ENSDARG00000098897 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000098897
Namepds5b
DescriptionPDS5 cohesin associated factor B [Source:ZFIN;Acc:ZDB-GENE-091217-2]
OrganismDanio rerio (zebrafish)
Orthologs(s)24 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
983
  • 983
96.71
  • 96.71
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
  • 2.71e3
  • 3.00e3
  • 6.68e3
94.66
  • 94.66
  • 90.93
  • 89.96
  • 77.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
1.65e3
  • 1.65e3
  • 2.50e3
  • 2.63e3
  • 2.79e3
  • 2.80e3
  • 2.94e3
  • 3.01e3
  • 3.02e3
  • 3.19e3
  • 3.32e3
  • 3.48e3
  • 3.52e3
  • 4.31e3
  • 4.56e3
94.46
  • 94.46
  • 91.64
  • 91.19
  • 90.65
  • 90.63
  • 90.17
  • 89.91
  • 89.90
  • 89.31
  • 88.90
  • 88.33
  • 88.23
  • 85.58
  • 84.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.88e3
  • 1.88e3
  • 3.07e3
  • 3.81e3
  • 4.28e3
  • 6.02e3
93.72
  • 93.72
  • 89.74
  • 87.25
  • 85.66
  • 79.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.92e3
  • 1.92e3
93.58
  • 93.58
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
2.00e3
  • 2.00e3
  • 2.76e3
  • 2.81e3
  • 3.07e3
  • 3.18e3
  • 3.53e3
  • 4.01e3
  • 4.19e3
  • 4.39e3
  • 4.40e3
93.29
  • 93.29
  • 90.76
  • 90.60
  • 89.72
  • 89.36
  • 88.18
  • 86.58
  • 85.97
  • 85.30
  • 85.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
2.62e3
  • 2.62e3
  • 2.99e3
  • 3.69e3
  • 3.96e3
  • 4.27e3
  • 5.20e3
91.21
  • 91.21
  • 90.00
  • 87.63
  • 86.73
  • 85.72
  • 82.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.91
  • 90.91
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
3.02e3
  • 3.02e3
  • 5.01e3
  • 1.19e4
89.87
  • 89.87
  • 83.24
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.08e3
  • 3.08e3
89.70
  • 89.70
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.54
  • 89.54
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.42e3
  • 3.42e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
  • 8.38e3
87.41
  • 87.41
  • 71.94
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
87.02
  • 87.02
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.91e3
  • 3.91e3
86.90
  • 86.90
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.56
  • 86.56
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.17e3
  • 4.17e3
  • 4.21e3
  • 4.90e3
86.05
  • 86.05
  • 85.92
  • 83.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010323cranial skeletal system
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.05e3
  • 5.05e3
83.10
  • 83.10
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.12e3
  • 5.12e3
82.85
  • 82.85
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
81.89
  • 81.89
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.49e3
  • 5.49e3
  • 6.66e3
81.64
  • 81.64
  • 77.71
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.81e3
  • 5.81e3
80.53
  • 80.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.35e3
  • 6.35e3
78.73
  • 78.73
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.67e3
  • 6.67e3
77.67
  • 77.67
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.81
  • 75.81
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.24e3
  • 7.24e3
75.78
  • 75.78
AEIR
  • AEIR
UBERON:0006284early prosencephalic vesicle
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.70e3
  • 7.70e3
74.21
  • 74.21
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.59e3
  • 8.59e3
71.23
  • 71.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.46e3
  • 9.46e3
68.31
  • 68.31
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0011242ethmoid cartilage
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.14
  • 57.14
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
1.31e4
  • 1.31e4
  • 1.49e4
56.23
  • 56.23
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000029Pharyngula:Prim-5
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002422fourth ventricle
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000098897.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000098897.

Cross-references

EnsemblENSDARG00000098897 (pds5b)
ZFINZDB-GENE-091217-2 (pds5b)
EMBLCR855379, CT027778, CU369047
Uniprot/SPTREMBLX1WDY6, X1WDY6_DANRE

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