D. rerio Gene: cul3b - ENSDARG00000100108 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000100108
Namecul3b
Descriptioncullin 3b [Source:ZFIN;Acc:ZDB-GENE-081007-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cul3
Orthologs(s)26 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
2.58e3
  • 2.58e3
  • 3.90e3
91.37
  • 91.37
  • 86.93
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.81
  • 86.81
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
4.01e3
  • 4.01e3
  • 4.79e3
  • 5.36e3
  • 5.61e3
  • 5.76e3
86.56
  • 86.56
  • 83.96
  • 82.07
  • 81.20
  • 80.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
86.37
  • 86.37
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.31
  • 86.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.05
  • 86.05
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
85.60
  • 85.60
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.39e3
  • 4.39e3
85.31
  • 85.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.39e3
  • 4.39e3
85.29
  • 85.29
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
4.39e3
  • 4.39e3
  • 4.99e3
85.29
  • 85.29
  • 83.29
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
84.63
  • 84.63
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.76e3
  • 4.76e3
84.08
  • 84.08
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.97
  • 82.97
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
82.74
  • 82.74
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.64
  • 82.64
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.26e3
  • 5.26e3
  • 5.44e3
82.39
  • 82.39
  • 81.80
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.29e3
  • 5.29e3
82.28
  • 82.28
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.37e3
  • 5.37e3
  • 5.86e3
82.01
  • 82.01
  • 80.39
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
81.52
  • 81.52
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.20
  • 81.20
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.62e3
  • 5.62e3
  • 6.49e3
81.20
  • 81.20
  • 78.28
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.01
  • 81.01
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.99e3
  • 5.99e3
79.95
  • 79.95
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.17e3
  • 6.17e3
79.35
  • 79.35
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.64e3
  • 6.64e3
77.78
  • 77.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000100108.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000100108.

Cross-references

EnsemblENSDARG00000100108 (cul3b)
ZFINZDB-GENE-081007-1 (cul3b)
EMBLBC163249
Uniprot/SPTREMBLB3DIU1, B3DIU1_DANRE

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