D. rerio Gene: ccdc40 - ENSDARG00000100584 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000100584
Nameccdc40
Descriptioncoiled-coil domain containing 40 [Source:ZFIN;Acc:ZDB-GENE-060503-723]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7149866, lok, si:dkey-237i9.5, wu:fb11d02
Orthologs(s)19 orthologs
Paralog(s)50 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
873
  • 873
97.08
  • 97.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
87.60
  • 87.60
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
4.15e3
  • 4.15e3
  • 1.20e4
  • 1.20e4
  • 1.26e4
86.11
  • 86.11
  • 59.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.08e3
  • 5.08e3
  • 1.19e4
82.98
  • 82.98
  • 60.29
AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
5.50e3
  • 5.50e3
  • 1.49e4
81.57
  • 81.57
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
6.22e3
  • 6.22e3
  • 6.89e3
  • 6.89e3
79.16
  • 79.16
  • 76.92
  • 76.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.49e3
  • 7.49e3
74.92
  • 74.92
AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
8.40e3
  • 8.40e3
  • 9.19e3
  • 9.19e3
  • 9.51e3
  • 9.51e3
  • 9.60e3
71.86
  • 71.86
  • 69.22
  • 69.22
  • 68.17
  • 68.17
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.14
  • 70.14
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.12e3
  • 9.12e3
69.47
  • 69.47
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.44e3
  • 9.44e3
  • 9.44e3
  • 9.96e3
68.40
  • 68.40
  • 68.40
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.26
  • 64.26
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.29e4
  • 1.38e4
  • 1.51e4
64.20
  • 64.20
  • 63.05
  • 56.79
  • 53.65
  • 49.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.19
  • 64.19
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
1.08e4
  • 1.08e4
  • 1.08e4
  • 1.10e4
  • 1.12e4
  • 1.14e4
  • 1.17e4
  • 1.20e4
63.87
  • 63.87
  • 63.87
  • 63.32
  • 62.48
  • 61.75
  • 60.70
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.81
  • 63.81
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.10e4
  • 1.10e4
  • 1.47e4
63.14
  • 63.14
  • 50.84
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.01
  • 63.01
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.65
  • 62.65
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.14e4
  • 1.14e4
  • 1.14e4
  • 1.21e4
  • 1.23e4
61.75
  • 61.75
  • 61.75
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.20
  • 61.20
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.17e4
  • 1.17e4
  • 1.27e4
  • 1.27e4
60.68
  • 60.68
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.18e4
  • 1.18e4
60.48
  • 60.48
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.41
  • 57.41
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.32e4
  • 1.32e4
  • 1.32e4
  • 1.33e4
55.86
  • 55.86
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005721pronephric mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.33e4
  • 1.33e4
55.55
  • 55.55
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.38e4
  • 1.38e4
  • 1.58e4
53.63
  • 53.63
  • 47.19
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.77
  • 52.77
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.44e4
  • 1.44e4
  • 1.95e4
51.91
  • 51.91
  • 34.78
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.45e4
  • 1.45e4
51.39
  • 51.39
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.59e4
49.82
  • 49.82
  • 46.76
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.51
  • 44.51
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.17
  • 42.17
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.28
  • 40.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Cross-references

EnsemblENSDARG00000100584 (ccdc40)
ZFINZDB-GENE-060503-723 (ccdc40)
EMBLBC092181, BX005286, CR854963
Uniprot/SWISSPROTCCD40_DANRE, Q56A40

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