D. rerio Gene: TRIM35 (1 to many) - ENSDARG00000100721 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000100721
NameTRIM35 (1 to many)
Descriptionsi:ch211-175l6.2 [Source:ZFIN;Acc:ZDB-GENE-060503-108]
OrganismDanio rerio (zebrafish)
Synonym(s)hls5, kiaa1098, mair
Orthologs(s)2 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
74.86
  • 74.86
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
9.32e3
  • 9.32e3
68.81
  • 68.81
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.24
  • 61.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.23
  • 53.23
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.16
  • 52.16
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.50
  • 47.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.00
  • 47.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.89
  • 40.89
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.75
  • 37.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.13
  • 37.13
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.98
  • 34.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.30
  • 29.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
27.90
  • 27.90
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
2.16e4
  • 2.16e4
  • 2.43e4
  • 2.61e4
  • 2.67e4
  • 2.77e4
27.61
  • 27.61
  • 18.62
  • 12.60
  • 10.63
  • 7.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
2.18e4
  • 2.18e4
26.97
  • 26.97
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.23e4
  • 2.23e4
25.23
  • 25.23
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
2.32e4
  • 2.32e4
22.24
  • 22.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000100721.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi25 genesCompare expression
Clupeocephala26 genesCompare expression
Euteleostomi28 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000100721.

Cross-references

EnsemblENSDARG00000100721 (TRIM35 (1 to many))
HGNCHGNC:16285 (TRIM35 (1 to many))
ZFINZDB-GENE-060503-108 (si:ch211-175l6.2)
EMBLAL954363
Uniprot/SPTREMBLF1QDD5, F1QDD5_DANRE, Q1MT12, Q1MT12_DANRE

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