D. rerio Gene: nr5a2 - ENSDARG00000100940 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000100940
Namenr5a2
Descriptionnuclear receptor subfamily 5, group A, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-79]
OrganismDanio rerio (zebrafish)
Synonym(s)ff1a, ftz, ftzf1, lrh1, sf1, zff1, zff1a, zff1b
Orthologs(s)19 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
1.87e3
  • 1.87e3
  • 3.56e3
  • 3.73e3
  • 4.60e3
  • 4.98e3
  • 1.12e4
  • 1.28e4
  • 1.31e4
  • 1.49e4
93.75
  • 93.75
  • 88.09
  • 87.50
  • 84.60
  • 83.33
  • 62.48
  • 57.13
  • 56.24
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
2.99e3
  • 2.99e3
  • 3.74e3
  • 3.93e3
90.00
  • 90.00
  • 87.49
  • 86.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003894liver primordium
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
3.32e3
  • 3.32e3
  • 3.32e3
  • 3.73e3
88.89
  • 88.89
  • 88.89
  • 87.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.45e3
  • 3.45e3
  • 3.73e3
  • 7.47e3
  • 7.91e3
88.46
  • 88.46
  • 87.50
  • 74.99
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.93e3
  • 3.93e3
  • 4.39e3
  • 4.48e3
  • 4.48e3
  • 5.34e3
  • 8.15e3
  • 8.83e3
86.84
  • 86.84
  • 85.29
  • 84.99
  • 84.99
  • 82.13
  • 72.71
  • 70.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.48e3
  • 4.48e3
  • 4.48e3
  • 5.34e3
  • 5.43e3
  • 5.98e3
  • 8.40e3
  • 8.40e3
84.99
  • 84.99
  • 84.99
  • 82.14
  • 81.81
  • 79.99
  • 71.86
  • 71.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
4.48e3
  • 4.48e3
  • 5.50e3
  • 7.80e3
  • 8.22e3
84.99
  • 84.99
  • 81.57
  • 73.90
  • 72.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
4.72e3
  • 4.72e3
  • 4.98e3
  • 4.98e3
  • 5.20e3
  • 5.27e3
  • 7.47e3
  • 8.45e3
84.20
  • 84.20
  • 83.33
  • 83.32
  • 82.60
  • 82.35
  • 74.98
  • 71.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000061anatomical structure
  • ZFS:0000024Segmentation:5-9 somites
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
6.97e3
  • 6.97e3
  • 7.97e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.96e3
  • 9.96e3
  • 1.49e4
76.66
  • 76.66
  • 73.32
  • 69.99
  • 69.43
  • 69.43
  • 66.65
  • 66.65
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 1.12e4
  • 1.39e4
75.00
  • 75.00
  • 62.49
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.40e3
  • 8.40e3
  • 8.79e3
71.86
  • 71.86
  • 70.57
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
9.79e3
  • 9.79e3
  • 1.20e4
  • 1.25e4
  • 1.31e4
  • 1.34e4
  • 1.38e4
67.21
  • 67.21
  • 59.98
  • 58.30
  • 56.24
  • 54.97
  • 53.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
1.03e4
  • 1.03e4
  • 1.33e4
  • 1.43e4
  • 1.43e4
  • 1.44e4
  • 1.46e4
  • 1.46e4
  • 1.46e4
  • 1.47e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
  • 1.51e4
  • 1.51e4
  • 1.52e4
65.61
  • 65.61
  • 55.40
  • 52.18
  • 52.02
  • 51.67
  • 51.20
  • 51.06
  • 51.01
  • 50.88
  • 50.63
  • 50.50
  • 49.88
  • 49.56
  • 49.43
  • 49.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.31e4
  • 1.50e4
  • 1.51e4
  • 1.54e4
  • 1.54e4
  • 1.55e4
  • 1.60e4
  • 1.61e4
  • 1.63e4
65.36
  • 65.36
  • 56.25
  • 49.66
  • 49.42
  • 48.57
  • 48.29
  • 48.19
  • 46.52
  • 46.05
  • 45.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 49.99
AEIR
  • AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072368 cell stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.10
  • 59.10
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000033Hatching:Long-pec
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.27e4
  • 1.27e4
57.47
  • 57.47
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.31e4
  • 1.31e4
  • 1.33e4
56.23
  • 56.23
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.85
  • 55.85
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.32e4
  • 1.32e4
  • 1.37e4
  • 1.71e4
55.66
  • 55.66
  • 54.10
  • 42.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
1.33e4
  • 1.33e4
  • 1.36e4
  • 1.49e4
55.55
  • 55.55
  • 54.53
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.13
  • 55.13
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.39e4
54.53
  • 54.53
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
  • 2.27e4
53.33
  • 53.33
  • 23.85
AEIR
  • AEIR
  • AEIR
ZFA:0000841slow muscle cell somite 14 (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0000963slow muscle cell somite 1 (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0000972slow muscle cell somite 4 (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0000973slow muscle cell somite 7 (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0001047slow muscle cell somite 10 (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005739pancreatic acinar cell (Danio)
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000084yolk
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:00072368 cell stage
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.50e4
  • 1.50e4
  • 1.52e4
49.76
  • 49.76
  • 49.02
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.51e4
  • 1.51e4
  • 1.54e4
49.44
  • 49.44
  • 48.31
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.32
  • 48.32
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.64e4
  • 1.64e4
45.24
  • 45.24
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.71
  • 44.71
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.59
  • 40.59
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.37
  • 40.37
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.31
  • 40.31
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.87
  • 38.87
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.19
  • 34.19
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.46
  • 31.46
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.23
  • 22.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000100940.

Cross-references

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