D. rerio Gene: CCDC39 - ENSDARG00000100981 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000100981
NameCCDC39
Descriptioncoiled-coil domain containing 39 [Source:HGNC Symbol;Acc:HGNC:25244]
OrganismDanio rerio (zebrafish)
Synonym(s)cild14, dkfzp434a128, fap59
Orthologs(s)23 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
710
  • 710
97.63
  • 97.63
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.04e3
  • 6.04e3
  • 9.69e3
79.79
  • 79.79
  • 67.57
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
78.51
  • 78.51
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
6.64e3
  • 6.64e3
  • 1.10e4
  • 1.21e4
  • 1.52e4
  • 1.69e4
77.77
  • 77.77
  • 63.14
  • 59.35
  • 49.26
  • 43.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.55e3
  • 7.55e3
  • 1.23e4
74.74
  • 74.74
  • 58.73
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.86
  • 73.86
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.58e3
  • 9.58e3
  • 9.83e3
67.91
  • 67.91
  • 67.08
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.57
  • 66.57
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.29
  • 64.29
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.76
  • 58.76
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.93
  • 57.93
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.30
  • 50.30
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.13
  • 46.13
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.61e4
  • 1.61e4
45.95
  • 45.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.72
  • 35.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.96
  • 33.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000100981.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000100981.

Cross-references

EnsemblENSDARG00000100981 (CCDC39)
HGNCHGNC:25244 (CCDC39)
EMBLCABZ01055306, FO704733
Uniprot/SPTREMBLA0A0G2L8X4, A0A0G2L8X4_DANRE

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