D. rerio Gene: nme3 - ENSDARG00000100990 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000100990
Namenme3
DescriptionNME/NM23 nucleoside diphosphate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-000210-34]
OrganismDanio rerio (zebrafish)
Synonym(s)ndpk-z3, ndpkz3, ndpkz3gn, nm23-z3, wu:fa99f09, zgc:92672

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
360
  • 360
  • 2.39e3
  • 2.44e3
  • 2.97e3
98.79778
  • 98.79778
  • 92.00328
  • 91.82483
  • 90.05308
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
710
  • 710
97.62736
  • 97.62736
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.19e3
  • 1.19e3
  • 1.35e3
  • 1.45e3
  • 1.53e3
  • 1.59e3
  • 2.06e3
  • 2.21e3
  • 3.98e3
  • 4.06e3
  • 4.30e3
96.00884
  • 96.00884
  • 95.48836
  • 95.15343
  • 94.87995
  • 94.69139
  • 93.10866
  • 92.58882
  • 86.68834
  • 86.40542
  • 85.60855
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.33e3
  • 1.33e3
  • 2.63e3
  • 2.92e3
  • 3.71e3
  • 4.85e3
  • 6.48e3
95.54355
  • 95.54355
  • 91.20353
  • 90.21270
  • 87.57580
  • 83.74808
  • 78.31293
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.57e3
  • 1.57e3
94.74869
  • 94.74869
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.70e3
  • 1.70e3
94.31527
  • 94.31527
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.75e3
  • 1.75e3
  • 5.23e3
  • 1.49e4
94.13009
  • 94.13009
  • 82.49309
  • 49.94307
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.85e3
  • 1.85e3
93.79208
  • 93.79208
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.55436
  • 93.55436
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.98e3
  • 1.98e3
  • 2.11e3
  • 2.58e3
  • 2.69e3
  • 2.73e3
  • 2.95e3
  • 3.03e3
  • 3.46e3
  • 3.56e3
  • 3.73e3
  • 4.03e3
  • 4.98e3
  • 5.49e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.85e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 1.36e4
  • 1.45e4
  • 1.47e4
  • 1.48e4
93.36972
  • 93.36972
  • 92.93095
  • 91.36741
  • 90.99203
  • 90.86539
  • 90.13204
  • 89.85695
  • 88.41911
  • 88.07447
  • 87.50320
  • 86.52105
  • 83.32833
  • 81.61434
  • 78.11663
  • 77.76774
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.07230
  • 76.65831
  • 76.46134
  • 74.99330
  • 74.99330
  • 73.51770
  • 69.98828
  • 69.98828
  • 54.61343
  • 51.51395
  • 50.90001
  • 50.60553
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.24e3
  • 2.24e3
92.50517
  • 92.50517
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.31e3
  • 2.31e3
  • 2.66e3
  • 5.16e3
92.25289
  • 92.25289
  • 91.10223
  • 82.71748
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
88.92951
  • 88.92951
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.42538
  • 87.42538
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.95e3
  • 3.95e3
  • 8.23e3
  • 1.21e4
86.78502
  • 86.78502
  • 72.45049
  • 59.59033
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
84.21123
  • 84.21123
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.51013
  • 82.51013
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
  • 5.89e3
82.28055
  • 82.28055
  • 80.29508
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.74828
  • 81.74828
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.20417
  • 81.20417
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.94e3
  • 7.94e3
73.40522
  • 73.40522
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
73.21100
  • 73.21100
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.41245
  • 72.41245
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.35e3
  • 8.35e3
72.04856
  • 72.04856
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
8.80e3
  • 8.80e3
  • 9.04e3
  • 1.17e4
  • 1.28e4
  • 1.30e4
70.52694
  • 70.52694
  • 69.74410
  • 60.98550
  • 57.26414
  • 56.41610
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.34273
  • 66.34273
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.85072
  • 65.85072
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.50e4
62.41798
  • 62.41798
  • 49.93972
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.21e4
  • 1.21e4
59.43710
  • 59.43710
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.28e4
  • 1.28e4
57.23507
  • 57.23507
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
56.15960
  • 56.15960
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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