D. rerio Gene: rab3db - ENSDARG00000101534 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000101534
Namerab3db
DescriptionRAB3D, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-040718-428]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:86892
Orthologs(s)23 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.42
  • 95.42
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.21e3
  • 3.21e3
89.27
  • 89.27
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.57
  • 85.57
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
4.90e3
  • 4.90e3
  • 4.97e3
83.58
  • 83.58
  • 83.36
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.23
  • 80.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.53
  • 79.53
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.45e3
  • 6.45e3
  • 1.16e4
78.40
  • 78.40
  • 61.28
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.17
  • 76.17
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.70e3
  • 7.70e3
74.21
  • 74.21
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.29
  • 71.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
67.99
  • 67.99
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.90e3
  • 9.90e3
  • 1.31e4
66.86
  • 66.86
  • 56.17
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.97e3
  • 9.97e3
66.63
  • 66.63
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
  • 1.38e4
  • 1.38e4
  • 1.69e4
  • 1.85e4
60.26
  • 60.26
  • 53.74
  • 53.63
  • 43.58
  • 38.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.87
  • 52.87
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.46e4
  • 1.46e4
  • 1.75e4
51.23
  • 51.23
  • 41.48
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.11
  • 51.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
  • 2.07e4
47.24
  • 47.24
  • 30.80
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.83
  • 46.83
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.03
  • 46.03
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.16
  • 36.16
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.05
  • 35.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000101534.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Bilateria5 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000101534.

Cross-references

EnsemblENSDARG00000101534 (rab3db)
ZFINZDB-GENE-040718-428 (rab3db)
EMBLBC075784, CU571395
Uniprot/SPTREMBLQ6DI07, Q6DI07_DANRE

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