D. rerio Gene: COL10A1 (1 to many) - ENSDARG00000101535 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000101535
NameCOL10A1 (1 to many)
Descriptioncollagen, type X, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2185]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fk76c08
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
459
  • 459
98.47
  • 98.47
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
522
  • 522
98.26
  • 98.26
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.26e3
  • 1.26e3
95.78
  • 95.78
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.60e3
  • 1.60e3
  • 1.65e4
  • 1.83e4
94.65
  • 94.65
  • 44.70
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.86
  • 92.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.84
  • 78.84
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.90
  • 75.90
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
72.15
  • 72.15
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
  • 1.85e4
50.57
  • 50.57
  • 38.09
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.66e4
  • 1.66e4
  • 1.72e4
  • 1.88e4
44.47
  • 44.47
  • 42.36
  • 37.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.80
  • 40.80
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.73
  • 33.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.70
  • 32.70
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.44
  • 31.44
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.32
  • 31.32
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
2.56e4
  • 2.56e4
14.42
  • 14.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000101535.

Cross-references

EnsemblENSDARG00000101535 (COL10A1 (1 to many))
HGNCHGNC:2185 (COL10A1 (1 to many))

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