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D. rerio Gene: slc1a2b - ENSDARG00000102453 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000102453
Nameslc1a2b
Descriptionsolute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
OrganismDanio rerio (zebrafish)
Synonym(s)eaat2, eaat2a, fj34b12, slc1a1, slc1a2, slc1a2a, tnt, wu:fj34b12, zgc:65897
Orthologs(s)19 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
244
  • 244
  • 458
  • 738
  • 842
  • 1.57e3
  • 3.27e3
  • 6.58e3
  • 7.65e3
  • 1.19e4
  • 1.35e4
  • 1.46e4
  • 1.51e4
  • 1.52e4
99.19
  • 99.19
  • 98.47
  • 97.53
  • 97.19
  • 94.74
  • 89.05
  • 77.97
  • 74.40
  • 60.18
  • 54.82
  • 51.01
  • 49.33
  • 48.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
253
  • 253
  • 6.76e3
  • 9.96e3
  • 1.36e4
  • 1.41e4
99.16
  • 99.16
  • 77.37
  • 66.67
  • 54.53
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
300
  • 300
  • 435
  • 891
  • 1.64e3
  • 5.17e3
  • 6.03e3
  • 6.42e3
  • 1.32e4
  • 1.35e4
  • 1.50e4
99.00
  • 99.00
  • 98.55
  • 97.02
  • 94.50
  • 82.70
  • 79.81
  • 78.51
  • 55.85
  • 54.93
  • 49.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
375
  • 375
  • 397
98.75
  • 98.75
  • 98.67
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
402
  • 402
  • 734
  • 764
98.66
  • 98.66
  • 97.55
  • 97.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
628
  • 628
  • 1.01e3
  • 4.44e3
  • 7.16e3
  • 1.12e4
97.90
  • 97.90
  • 96.61
  • 85.12
  • 76.03
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.17
  • 90.17
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.18e3
  • 3.18e3
89.34
  • 89.34
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.46e3
  • 3.46e3
88.43
  • 88.43
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
85.37
  • 85.37
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000027Segmentation:20-25 somites
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.03e3
  • 5.03e3
83.16
  • 83.16
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.29e4
65.61
  • 65.61
  • 56.79
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.07e4
  • 1.20e4
64.26
  • 64.26
  • 64.26
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.08e4
  • 1.08e4
63.88
  • 63.88
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.10e4
  • 1.10e4
  • 1.18e4
  • 1.62e4
63.15
  • 63.15
  • 60.43
  • 45.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
  • 2.15e4
58.84
  • 58.84
  • 27.88
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.24e4
  • 1.24e4
  • 1.43e4
  • 1.45e4
58.35
  • 58.35
  • 52.02
  • 51.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.24e4
  • 1.24e4
  • 1.28e4
  • 1.34e4
58.33
  • 58.33
  • 57.11
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.63
  • 57.63
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.32e4
  • 1.32e4
  • 1.33e4
55.86
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.49
  • 48.49
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.62e4
  • 1.62e4
45.71
  • 45.71
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.75
  • 44.75
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.78
  • 38.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.45
  • 31.45
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.11
  • 28.11
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.72
  • 24.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria19 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000102453.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000102453.

Cross-references

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