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D. rerio Gene: rbm24a - ENSDARG00000102995 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000102995
Namerbm24a
DescriptionRNA binding motif protein 24a [Source:ZFIN;Acc:ZDB-GENE-040628-1]
OrganismDanio rerio (zebrafish)
Synonym(s)rbm24, seb-4
Orthologs(s)2 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
508
  • 508
  • 1.31e4
  • 1.34e4
  • 1.37e4
  • 1.39e4
98.30
  • 98.30
  • 56.22
  • 54.97
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
703
  • 703
  • 1.49e4
97.65
  • 97.65
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
708
  • 708
  • 1.24e3
  • 1.72e3
  • 1.42e4
97.63
  • 97.63
  • 95.84
  • 94.23
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
760
  • 760
97.46
  • 97.46
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
879
  • 879
97.06
  • 97.06
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
993
  • 993
  • 1.59e3
  • 1.89e3
  • 2.58e3
  • 3.15e3
  • 3.31e3
  • 3.56e3
  • 3.88e3
  • 4.13e3
  • 5.61e3
96.68
  • 96.68
  • 94.69
  • 93.69
  • 91.38
  • 89.44
  • 88.91
  • 88.09
  • 87.01
  • 86.16
  • 81.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.00e3
  • 1.00e3
96.65
  • 96.65
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.38e3
  • 1.38e3
95.40
  • 95.40
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.27
  • 95.27
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000012Blastula:High
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000019Gastrula:Shield
1.98e3
  • 1.98e3
  • 2.49e3
  • 2.72e3
  • 3.03e3
  • 3.55e3
  • 3.66e3
  • 3.92e3
  • 4.64e3
  • 4.78e3
  • 5.16e3
  • 5.22e3
  • 5.79e3
  • 6.54e3
  • 6.79e3
  • 7.47e3
  • 8.02e3
93.37
  • 93.37
  • 91.66
  • 90.90
  • 89.86
  • 88.12
  • 87.74
  • 86.89
  • 84.45
  • 84.00
  • 82.71
  • 82.52
  • 80.63
  • 78.10
  • 77.27
  • 74.99
  • 73.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.42
  • 92.42
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.62e3
  • 2.62e3
91.23
  • 91.23
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
2.70e3
  • 2.70e3
  • 4.99e3
  • 5.93e3
  • 6.40e3
  • 8.51e3
90.96
  • 90.96
  • 83.31
  • 80.16
  • 78.57
  • 71.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.58
  • 90.58
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.93e3
  • 2.93e3
90.20
  • 90.20
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.57e3
  • 3.57e3
  • 3.85e3
  • 4.27e3
88.05
  • 88.05
  • 87.11
  • 85.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
3.83e3
  • 3.83e3
  • 1.36e4
87.17
  • 87.17
  • 54.52
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
86.66
  • 86.66
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
  • 1.27e4
85.36
  • 85.36
  • 57.44
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
84.63
  • 84.63
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.71e3
  • 4.71e3
  • 4.85e3
  • 5.84e3
  • 6.25e3
  • 7.81e3
  • 1.01e4
84.22
  • 84.22
  • 83.77
  • 80.44
  • 79.09
  • 73.84
  • 66.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.21e3
  • 5.21e3
82.57
  • 82.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.48e3
  • 5.48e3
81.67
  • 81.67
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.62
  • 79.62
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.59e3
  • 6.59e3
77.92
  • 77.92
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.95e3
  • 6.95e3
  • 7.94e3
76.73
  • 76.73
  • 73.42
AEIR
  • AEIR
  • AEIR
UBERON:0002376cranial muscle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.67e3
  • 8.67e3
70.97
  • 70.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.72
  • 70.72
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
9.47e3
  • 9.47e3
  • 1.24e4
68.29
  • 68.29
  • 58.33
AEIR
  • AEIR
  • AEIR
ZFA:0005490myocardial precursor (Danio)
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
  • 1.24e4
65.93
  • 65.93
  • 58.45
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.01
  • 60.01
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.68
  • 59.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.48
  • 59.48
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
  • 1.29e4
  • 1.45e4
58.60
  • 58.60
  • 56.65
  • 51.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000022Gastrula:Bud
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.35e4
57.14
  • 57.14
  • 54.96
AEIR
  • AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.41e4
56.24
  • 56.24
  • 52.92
AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000025Segmentation:10-13 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0002201vasculature of trunk
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002531paired fin bud
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004467musculature of pharynx
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011648jaw muscle
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000102995.

Cross-references

EnsemblENSDARG00000102995 (rbm24a)
ZFINZDB-GENE-040628-1 (rbm24a)
EMBLAB080735, BC163027, BC163034, CU856142, CU856207
Uniprot/SPTREMBLB3DI77, B3DI77_DANRE
Uniprot/SWISSPROTQ76LC6, RBM24_DANRE

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