D. rerio Gene: si:dkey-19c16.12 - ENSDARG00000103143 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000103143
Namesi:dkey-19c16.12
Descriptionsi:dkey-19c16.12 [Source:ZFIN;Acc:ZDB-GENE-120703-20]
OrganismDanio rerio (zebrafish)
Paralog(s)12 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.84e3
  • 3.84e3
87.16
  • 87.16
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
84.19
  • 84.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.23
  • 81.23
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.12e3
  • 6.12e3
79.49
  • 79.49
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.17e3
  • 6.17e3
  • 1.77e4
79.33
  • 79.33
  • 40.68
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.76e3
  • 6.76e3
77.36
  • 77.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.98e3
  • 6.98e3
76.64
  • 76.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.79e3
  • 8.79e3
70.58
  • 70.58
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
69.45
  • 69.45
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.67e3
  • 9.67e3
67.64
  • 67.64
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.11e4
  • 1.11e4
  • 1.74e4
62.77
  • 62.77
  • 41.90
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.57
  • 61.57
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.98
  • 60.98
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.30
  • 60.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.48
  • 59.48
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.72
  • 56.72
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.38e4
  • 1.38e4
53.75
  • 53.75
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.32
  • 53.32
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
50.56
  • 50.56
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.51e4
  • 1.51e4
  • 1.72e4
  • 1.79e4
  • 1.87e4
  • 1.90e4
49.40
  • 49.40
  • 42.38
  • 39.91
  • 37.36
  • 36.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.76e4
  • 1.76e4
41.04
  • 41.04
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.82e4
  • 1.82e4
  • 1.82e4
38.93
  • 38.93
  • 38.91
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata12 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000103143.

Cross-references

EnsemblENSDARG00000103143 (si:dkey-19c16.12)
ZFINZDB-GENE-120703-20 (si:dkey-19c16.12)
EMBLBX539310
Uniprot/SPTREMBLK7DY87, K7DY87_DANRE

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