D. rerio Gene: nr5a1a - ENSDARG00000103176 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000103176
Namenr5a1a
Descriptionnuclear receptor subfamily 5, group A, member 1a [Source:ZFIN;Acc:ZDB-GENE-010504-1]
OrganismDanio rerio (zebrafish)
Synonym(s)ff1b, nr5a4, sf1-a
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006857interrenal primordium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
3.73e3
  • 3.73e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
87.50
  • 87.50
  • 83.34
  • 75.00
  • 75.00
  • 75.00
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
6.40e3
  • 6.40e3
  • 1.34e4
  • 1.36e4
  • 1.49e4
78.56
  • 78.56
  • 54.99
  • 54.53
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.91
  • 77.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.58
  • 77.58
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
6.97e3
  • 6.97e3
  • 7.97e3
  • 8.54e3
  • 8.96e3
  • 9.96e3
  • 1.08e4
76.66
  • 76.66
  • 73.32
  • 71.42
  • 69.99
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.80e3
  • 1.49e4
75.00
  • 75.00
  • 67.17
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.83e3
  • 8.83e3
  • 9.10e3
  • 9.67e3
  • 9.96e3
  • 1.18e4
  • 1.23e4
  • 1.26e4
70.44
  • 70.44
  • 69.55
  • 67.63
  • 66.65
  • 60.39
  • 58.67
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000104life cycle
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
1.03e4
  • 1.03e4
  • 1.41e4
  • 1.43e4
  • 1.43e4
  • 1.43e4
  • 1.44e4
  • 1.44e4
  • 1.45e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
  • 1.51e4
  • 1.56e4
  • 1.58e4
  • 1.58e4
65.61
  • 65.61
  • 52.95
  • 52.16
  • 52.06
  • 52.00
  • 51.94
  • 51.66
  • 51.37
  • 50.64
  • 50.14
  • 49.92
  • 49.34
  • 47.61
  • 47.19
  • 47.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005564gonad primordium
  • ZFS:0000039Larval:Days 7-13
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0006856interrenal gland
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.66
  • 60.66
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.82
  • 54.82
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.07
  • 54.07
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.08
  • 53.08
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.44e4
  • 1.44e4
  • 1.69e4
  • 1.75e4
51.91
  • 51.91
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000634caudal hypothalamic zone (Danio)
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.78
  • 44.78
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.73e4
  • 1.73e4
  • 1.89e4
  • 1.97e4
42.13
  • 42.13
  • 36.80
  • 33.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
  • 1.91e4
41.83
  • 41.83
  • 36.03
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.74e4
  • 1.74e4
  • 1.78e4
  • 1.78e4
  • 1.81e4
  • 1.90e4
  • 1.93e4
  • 1.98e4
  • 2.25e4
41.81
  • 41.81
  • 40.54
  • 40.40
  • 39.27
  • 36.52
  • 35.46
  • 33.78
  • 24.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
  • 1.76e4
41.75
  • 41.75
  • 41.22
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
  • 1.91e4
39.38
  • 39.38
  • 36.17
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.83e4
  • 1.83e4
38.75
  • 38.75
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.07e4
  • 2.07e4
30.60
  • 30.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.57
  • 25.57
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.35e4
  • 2.35e4
21.39
  • 21.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000103176.

Cross-references

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