D. rerio Gene: limk1a - ENSDARG00000103467 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000103467
Namelimk1a
DescriptionLIM domain kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061212-3]
OrganismDanio rerio (zebrafish)
Synonym(s)limk1, limk1 {eco:0000313|embl:aai63263.1,gn eco:0000313|zfin:zdb-gene-061212-3}
Orthologs(s)18 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000019camera-type eye
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
2.99e3
  • 2.99e3
  • 1.09e4
  • 1.10e4
90.00
  • 90.00
  • 63.63
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.80
  • 89.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:00072322 cell stage
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000022Gastrula:Bud
3.74e3
  • 3.74e3
  • 4.07e3
  • 4.07e3
  • 4.98e3
87.49
  • 87.49
  • 86.36
  • 86.36
  • 83.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.28
  • 80.28
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
  • 1.23e4
78.54
  • 78.54
  • 58.72
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.23e4
75.00
  • 75.00
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:2005010mid cerebral vein
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 1.21e4
75.00
  • 75.00
  • 59.50
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.77e3
  • 7.77e3
73.99
  • 73.99
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.29e3
  • 8.29e3
72.24
  • 72.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.13e3
  • 9.13e3
  • 1.31e4
69.42
  • 69.42
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.77
  • 68.77
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.10e4
66.67
  • 66.67
  • 63.32
AEIR
  • AEIR
  • AEIR
UBERON:0001899epithalamus
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.08e4
  • 1.08e4
  • 1.10e4
63.87
  • 63.87
  • 63.32
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.69
  • 63.69
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
63.32
  • 63.32
AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.14e4
62.50
  • 62.50
  • 61.74
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.20e4
  • 1.20e4
62.50
  • 62.50
  • 60.68
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.28e4
62.50
  • 62.50
  • 57.13
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.25e4
62.49
  • 62.49
  • 58.30
AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.48
  • 62.48
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.34
  • 62.34
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.14e4
  • 1.14e4
  • 1.47e4
61.79
  • 61.79
  • 50.71
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.44
  • 61.44
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.12
  • 61.12
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.93
  • 60.93
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.73
  • 59.73
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.21e4
  • 1.21e4
59.44
  • 59.44
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
1.26e4
  • 1.26e4
  • 1.38e4
  • 1.38e4
  • 1.40e4
  • 1.56e4
57.86
  • 57.86
  • 53.72
  • 53.67
  • 53.16
  • 47.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.29e4
  • 1.29e4
  • 1.41e4
56.71
  • 56.71
  • 52.76
AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.29e4
  • 1.29e4
  • 1.31e4
  • 1.38e4
56.65
  • 56.65
  • 56.23
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
55.86
  • 55.86
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.27
  • 55.27
AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.38e4
  • 1.38e4
  • 1.50e4
53.63
  • 53.63
  • 49.64
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.47e4
  • 1.47e4
  • 1.54e4
50.88
  • 50.88
  • 48.28
AEIR
  • AEIR
  • AEIR
UBERON:0000959optic chiasma
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000016endocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.52e4
  • 1.52e4
49.23
  • 49.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.65
  • 47.65
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.96
  • 42.96
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.40
  • 29.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000103467.

Cross-references

EnsemblENSDARG00000103467 (limk1a)
ZFINZDB-GENE-061212-3 (limk1a)
EMBLBC163263, BX640522
Uniprot/SPTREMBLB3DIV5, B3DIV5_DANRE

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