D. rerio Gene: RBMS1 (1 to many) - ENSDARG00000103823 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000103823
NameRBMS1 (1 to many)
DescriptionRNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
OrganismDanio rerio (zebrafish)
Synonym(s)c2orf12, dkfzp564h0764, hcc-4, mssp-1, mssp-2, mssp-3, scr2, yc1
Orthologs(s)12 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.86e3
  • 3.86e3
87.09
  • 87.09
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.38e3
  • 4.38e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
4.38e3
  • 4.38e3
  • 5.67e3
85.33
  • 85.33
  • 81.00
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.94e3
  • 5.94e3
80.12
  • 80.12
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.50e3
  • 6.50e3
  • 1.18e4
78.24
  • 78.24
  • 60.38
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.17e3
  • 7.17e3
  • 1.09e4
75.99
  • 75.99
  • 63.51
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
69.03
  • 69.03
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
9.87e3
  • 9.87e3
  • 1.09e4
  • 1.13e4
  • 1.43e4
  • 1.70e4
66.94
  • 66.94
  • 63.38
  • 62.01
  • 52.10
  • 42.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.33
  • 66.33
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.35
  • 63.35
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.93
  • 60.93
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.18e4
  • 1.18e4
  • 1.44e4
60.45
  • 60.45
  • 51.93
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.96
  • 56.96
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.18
  • 56.18
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.40e4
  • 1.40e4
  • 1.41e4
52.97
  • 52.97
  • 52.85
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.26
  • 52.26
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.33
  • 51.33
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.85
  • 49.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.42
  • 48.42
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.07
  • 46.07
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.06
  • 44.06
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.33
  • 42.33
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.85e4
  • 1.85e4
37.93
  • 37.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.72
  • 34.72
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.75
  • 31.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000103823.

Cross-references

EnsemblENSDARG00000103823 (RBMS1 (1 to many))
HGNCHGNC:9907 (RBMS1 (1 to many))
EMBLCABZ01087906, CABZ01087907, CABZ01087908, CABZ01087909, CABZ01087910, CU138538
Uniprot/SPTREMBLA0A0G2KPJ7, A0A0G2KPJ7_DANRE

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