D. rerio Gene: arf4a - ENSDARG00000103858 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000103858
Namearf4a
DescriptionADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:101030, zgc:174360
Paralog(s)31 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
  • 1.28e4
  • 1.35e4
  • 1.45e4
  • 1.46e4
  • 1.50e4
70.71
  • 70.71
  • 57.18
  • 54.83
  • 51.57
  • 51.01
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.12
  • 64.12
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.74
  • 61.74
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.17e4
  • 1.17e4
  • 1.24e4
60.77
  • 60.77
  • 58.37
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.55
  • 58.55
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.37e4
  • 1.37e4
54.28
  • 54.28
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.42e4
  • 1.42e4
  • 1.55e4
52.38
  • 52.38
  • 48.22
AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.80
  • 51.80
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.53e4
  • 1.53e4
  • 1.61e4
  • 1.83e4
  • 2.30e4
48.63
  • 48.63
  • 46.13
  • 38.81
  • 23.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.70e4
48.54
  • 48.54
  • 43.01
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.13
  • 48.13
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.20
  • 47.20
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.18
  • 47.18
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.64e4
  • 1.64e4
  • 2.15e4
44.92
  • 44.92
  • 28.14
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.70
  • 44.70
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.17
  • 44.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.86
  • 41.86
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.65
  • 39.65
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.91e4
  • 1.91e4
35.95
  • 35.95
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.55
  • 35.55
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.95
  • 30.95
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.54
  • 28.54
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Cross-references

EnsemblENSDARG00000103858 (arf4a)
ZFINZDB-GENE-040801-109 (arf4a)
EMBLCU638695
Uniprot/SPTREMBLF1R085, F1R085_DANRE

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