D. rerio Gene: rab27a - ENSDARG00000103935 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000103935
Namerab27a
DescriptionRAB27A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-050913-46]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:114135
Orthologs(s)24 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.65
  • 92.65
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.24
  • 87.24
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.93
  • 86.93
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.02e3
  • 4.02e3
  • 1.71e4
86.54
  • 86.54
  • 42.91
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.31e3
  • 4.31e3
  • 9.56e3
85.57
  • 85.57
  • 67.99
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.83
  • 84.83
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.18
  • 83.18
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.44e3
  • 6.44e3
78.44
  • 78.44
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.85
  • 77.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.58e3
  • 7.58e3
  • 9.07e3
74.62
  • 74.62
  • 69.64
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
7.88e3
  • 7.88e3
  • 8.39e3
  • 9.63e3
  • 9.68e3
  • 1.15e4
73.62
  • 73.62
  • 71.89
  • 67.75
  • 67.57
  • 61.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.61e3
  • 8.61e3
71.17
  • 71.17
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.29
  • 67.29
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
66.88
  • 66.88
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.92e3
  • 9.92e3
66.80
  • 66.80
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.06e4
  • 1.06e4
64.62
  • 64.62
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.07
  • 64.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.54
  • 63.54
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.46
  • 63.46
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.15e4
  • 1.15e4
  • 1.32e4
61.45
  • 61.45
  • 55.72
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.16e4
  • 1.16e4
  • 1.37e4
61.22
  • 61.22
  • 54.19
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.69
  • 59.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.36
  • 48.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species19 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000103935.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000103935.

Cross-references

EnsemblENSDARG00000103935 (rab27a)
ZFINZDB-GENE-050913-46 (rab27a)
EMBLBC097191, CR769778
Uniprot/SPTREMBLQ4V8U8, Q4V8U8_DANRE

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