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D. rerio Gene: smyhc2 - ENSDARG00000103969 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000103969
Namesmyhc2
Descriptionslow myosin heavy chain 2 [Source:ZFIN;Acc:ZDB-GENE-070822-12]
OrganismDanio rerio (zebrafish)
Synonym(s)smyhc3, zgc:171631
Orthologs(s)36 orthologs
Paralog(s)21 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
849
  • 849
97.16
  • 97.16
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
875
  • 875
97.07
  • 97.07
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
878
  • 878
  • 1.12e4
97.06
  • 97.06
  • 62.36
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.62
  • 95.62
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.23
  • 92.23
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
  • 1.17e4
  • 1.30e4
  • 1.42e4
90.44
  • 90.44
  • 60.70
  • 56.38
  • 52.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
2.93e3
  • 2.93e3
  • 5.17e3
  • 6.33e3
  • 8.27e3
  • 1.44e4
90.18
  • 90.18
  • 82.68
  • 78.79
  • 72.30
  • 51.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.95
  • 85.95
AEIR
  • AEIR
UBERON:2000384levator arcus palatini
  • ZFS:0000036Larval:Day 4
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:2002200hypobranchial muscle
  • ZFS:0000036Larval:Day 4
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
  • 9.96e3
83.34
  • 83.34
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.26e3
  • 5.26e3
  • 1.03e4
82.39
  • 82.39
  • 65.67
AEIR
  • AEIR
  • AEIR
UBERON:2000286superficial lateralis (teleost)
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:2000288supracarinalis
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000498dilator operculi
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000608ventral transverse
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2007008ventral intermandibularis anterior
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2007048ventral intermandibularis posterior
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2007052hyohyoideus
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.30e4
  • 1.30e4
56.38
  • 56.38
AEIR
  • AEIR
UBERON:0001043esophagus
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011649levator operculi
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011683adductor mandibulae
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2000177caudal oblique
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000216infracarinalis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000462abductor hyohyoid
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000465adductor operculi
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000522inferior hyohyoid
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.00
  • 49.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.00
  • 38.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.45
  • 31.45
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.77
  • 22.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species26 genesCompare expression
Bilateria24 species36 genesCompare expression

Orthology information comes from OMA : ENSDARG00000103969.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi2 genesCompare expression
Euteleostomi6 genesCompare expression
Chordata16 genesCompare expression
Bilateria17 genesCompare expression
Eukaryota21 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000103969.

Cross-references

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