D. rerio Gene: si:dkey-208k4.2 - ENSDARG00000104170 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000104170
Namesi:dkey-208k4.2
Descriptionsi:dkey-208k4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-6124]
OrganismDanio rerio (zebrafish)
Synonym(s)fi35c12, wu:fi35c12
Orthologs(s)1 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
555
  • 555
  • 753
  • 830
  • 3.01e3
  • 6.13e3
98.15
  • 98.15
  • 97.48
  • 97.22
  • 89.93
  • 79.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
561
  • 561
98.12
  • 98.12
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
565
  • 565
  • 7.04e3
98.11
  • 98.11
  • 76.42
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
987
  • 987
96.70
  • 96.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.63
  • 95.63
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.28
  • 92.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.01e3
  • 3.01e3
89.93
  • 89.93
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.08e3
  • 3.08e3
89.68
  • 89.68
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.18
  • 88.18
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
3.83e3
  • 3.83e3
  • 9.96e3
  • 1.24e4
  • 1.34e4
  • 1.58e4
  • 1.78e4
87.18
  • 87.18
  • 66.66
  • 58.54
  • 55.06
  • 47.10
  • 40.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.43
  • 85.43
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.38
  • 83.38
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
82.79
  • 82.79
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
8.04e3
  • 8.04e3
73.08
  • 73.08
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
  • 1.42e4
71.11
  • 71.11
  • 52.43
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
8.73e3
  • 8.73e3
  • 1.10e4
  • 1.27e4
  • 1.30e4
  • 1.64e4
70.77
  • 70.77
  • 63.25
  • 57.55
  • 56.32
  • 45.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.74
  • 40.74
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.82
  • 30.82
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
24.90
  • 24.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.39e4
  • 2.39e4
19.85
  • 19.85
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.44e4
  • 2.44e4
18.22
  • 18.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.52e4
  • 2.52e4
15.57
  • 15.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000104170.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000104170.

Cross-references

EnsemblENSDARG00000104170 (si:dkey-208k4.2)
ZFINZDB-GENE-030131-6124 (si:dkey-208k4.2)
EMBLBX649471
Uniprot/SPTREMBLF1QWS3, F1QWS3_DANRE, I3ISP3, I3ISP3_DANRE, I3ISR4, I3ISR4_DANRE

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