D. rerio Gene: rtn4b - ENSDARG00000104347 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000104347
Namertn4b
Descriptionreticulon 4b [Source:ZFIN;Acc:ZDB-GENE-030710-2]
OrganismDanio rerio (zebrafish)
Synonym(s)rtn6

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
424
  • 424
98.58
  • 98.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
463
  • 463
98.45
  • 98.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
939
  • 939
96.86
  • 96.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
939
  • 939
96.86
  • 96.86
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.21e3
  • 1.21e3
  • 3.90e3
  • 4.16e3
  • 4.38e3
  • 7.99e3
95.94
  • 95.94
  • 86.94
  • 86.08
  • 85.35
  • 73.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.05e3
  • 2.05e3
  • 9.36e3
93.13
  • 93.13
  • 68.65
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.54e3
  • 2.54e3
  • 7.11e3
91.51
  • 91.51
  • 76.20
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.85e3
  • 2.85e3
90.45
  • 90.45
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.16e3
  • 3.16e3
  • 4.73e3
89.44
  • 89.44
  • 84.17
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.67e3
  • 3.67e3
87.70
  • 87.70
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.05e3
  • 4.05e3
86.45
  • 86.45
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.25
  • 86.25
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
4.92e3
  • 4.92e3
  • 8.84e3
83.52
  • 83.52
  • 70.40
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.02e3
  • 5.02e3
83.20
  • 83.20
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.73e3
  • 5.73e3
  • 6.39e3
80.80
  • 80.80
  • 78.61
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.78
  • 79.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.27e3
  • 6.27e3
  • 1.50e4
79.00
  • 79.00
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.67e3
  • 7.67e3
74.33
  • 74.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.89e3
  • 8.89e3
70.23
  • 70.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.37
  • 67.37
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
64.99
  • 64.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.79
  • 64.79
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.99
  • 62.99
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.11e4
  • 1.11e4
62.81
  • 62.81
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.16
  • 62.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.76
  • 61.76
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
  • 1.50e4
58.33
  • 58.33
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.11
  • 57.11
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
  • 1.49e4
56.65
  • 56.65
  • 49.97
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
  • 1.34e4
56.65
  • 56.65
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.96
  • 54.96
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000104347 (rtn4b)
ZFINZDB-GENE-030710-2 (rtn4b)

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