D. rerio Gene: gnb1b - ENSDARG00000104372 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000104372
Namegnb1b
Descriptionguanine nucleotide binding protein (G protein), beta polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2855]
OrganismDanio rerio (zebrafish)
Synonym(s)fb39f01, gnb1l, gnb1l {eco:0000313|embl:aah44482.1,gn eco:0000313|zfin:zdb-gene-040426-2855}, gnb1x, wu:fb39f01, wu:fb98e06, wu:fj09d12, zgc:55774
Orthologs(s)24 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
337
  • 337
  • 1.29e4
98.87
  • 98.87
  • 56.79
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
552
  • 552
  • 837
  • 1.12e4
  • 1.49e4
98.15
  • 98.15
  • 97.20
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
673
  • 673
  • 1.14e3
97.75
  • 97.75
  • 96.19
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
898
  • 898
  • 1.20e3
97.00
  • 97.00
  • 95.98
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
903
  • 903
96.98
  • 96.98
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
908
  • 908
  • 1.23e3
  • 1.31e3
  • 1.32e3
  • 1.46e3
96.96
  • 96.96
  • 95.88
  • 95.62
  • 95.60
  • 95.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.12e3
  • 1.12e3
96.25
  • 96.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.56
  • 95.56
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.34e3
  • 1.34e3
  • 1.38e3
95.52
  • 95.52
  • 95.39
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
  • 1.57e3
95.34
  • 95.34
  • 94.75
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.90
  • 94.90
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.99e3
  • 1.99e3
  • 2.99e3
  • 6.64e3
93.33
  • 93.33
  • 90.00
  • 77.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.92
  • 92.92
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.44e3
  • 2.44e3
91.82
  • 91.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.69
  • 91.69
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.39
  • 91.39
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.11
  • 91.11
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.10
  • 91.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
88.58
  • 88.58
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
88.36
  • 88.36
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:00072368 cell stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
3.74e3
  • 3.74e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 7.03e3
  • 7.47e3
  • 8.96e3
  • 8.96e3
87.49
  • 87.49
  • 78.12
  • 77.77
  • 77.27
  • 76.46
  • 74.99
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.88e3
  • 3.88e3
87.00
  • 87.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.18e3
  • 4.18e3
86.00
  • 86.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
85.38
  • 85.38
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.81e3
  • 4.81e3
83.90
  • 83.90
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • UBERON:00072322 cell stage
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000030Pharyngula:Prim-15
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000104372.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Chordata3 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000104372.

Cross-references

EnsemblENSDARG00000104372 (gnb1b)
ZFINZDB-GENE-040426-2855 (gnb1b)
EMBLBC044482, BC152684, BC164143, CR854824, CU207276
Uniprot/SPTREMBLQ803H5, Q803H5_DANRE

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