D. rerio Gene: sec24a - ENSDARG00000104375 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000104375
Namesec24a
DescriptionSEC24 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-120926-1]
OrganismDanio rerio (zebrafish)
Orthologs(s)18 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.21
  • 96.21
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.16e3
  • 1.16e3
  • 6.04e3
96.13
  • 96.13
  • 79.78
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.98
  • 92.98
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.78
  • 91.78
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
2.46e3
  • 2.46e3
  • 2.80e3
  • 3.70e3
  • 4.09e3
  • 4.33e3
  • 4.45e3
  • 4.68e3
  • 5.15e3
  • 5.18e3
  • 6.04e3
91.76
  • 91.76
  • 90.64
  • 87.60
  • 86.31
  • 85.52
  • 85.11
  • 84.32
  • 82.75
  • 82.64
  • 79.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.50e3
  • 2.50e3
  • 2.70e3
  • 3.19e3
  • 3.56e3
  • 3.85e3
  • 4.08e3
91.65
  • 91.65
  • 90.95
  • 89.31
  • 88.08
  • 87.11
  • 86.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.69e3
  • 2.69e3
  • 3.41e3
  • 3.44e3
  • 7.84e3
  • 8.56e3
90.98
  • 90.98
  • 88.60
  • 88.48
  • 73.73
  • 71.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.75e3
  • 2.75e3
  • 5.89e3
90.80
  • 90.80
  • 80.26
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.76e3
  • 2.76e3
90.76
  • 90.76
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.43
  • 90.43
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
2.87e3
  • 2.87e3
  • 3.15e3
  • 3.77e3
  • 3.88e3
  • 4.22e3
  • 4.37e3
  • 4.40e3
  • 4.44e3
  • 4.48e3
  • 4.50e3
  • 4.63e3
  • 4.71e3
  • 4.73e3
  • 5.61e3
90.41
  • 90.41
  • 89.46
  • 87.37
  • 87.02
  • 85.89
  • 85.37
  • 85.27
  • 85.13
  • 85.01
  • 84.92
  • 84.50
  • 84.23
  • 84.17
  • 81.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.34
  • 90.34
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.93e3
  • 2.93e3
90.18
  • 90.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.81
  • 89.81
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.07e3
  • 3.07e3
89.72
  • 89.72
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.50e3
  • 3.50e3
88.30
  • 88.30
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.62e3
  • 3.62e3
87.88
  • 87.88
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.09e3
  • 4.09e3
86.31
  • 86.31
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
4.28e3
  • 4.28e3
  • 5.03e3
  • 5.69e3
85.69
  • 85.69
  • 83.16
  • 80.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.48e3
  • 4.48e3
  • 5.77e3
  • 6.34e3
  • 9.47e3
85.01
  • 85.01
  • 80.69
  • 78.77
  • 68.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.49e3
  • 4.49e3
84.96
  • 84.96
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.50e3
  • 4.50e3
84.94
  • 84.94
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
82.92
  • 82.92
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.28
  • 82.28
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.34e3
  • 5.34e3
82.14
  • 82.14
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.87e3
  • 6.87e3
77.02
  • 77.02
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.38e3
  • 7.38e3
  • 8.06e3
75.30
  • 75.30
  • 73.02
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
  • 1.02e4
75.10
  • 75.10
  • 65.98
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.32
  • 63.32
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.80
  • 46.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000104375.

Cross-references

EnsemblENSDARG00000104375 (sec24a)
ZFINZDB-GENE-120926-1 (sec24a)
EMBLCU302316
Uniprot/SPTREMBLE7FAP3, E7FAP3_DANRE

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