D. rerio Gene: slc4a5 - ENSDARG00000104387 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000104387
Nameslc4a5
Descriptionsolute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-161n19.2
Orthologs(s)23 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.04e3
  • 4.04e3
  • 1.29e4
  • 1.34e4
86.48
  • 86.48
  • 56.79
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.29
  • 80.29
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.64
  • 65.64
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.26e4
65.05
  • 65.05
  • 57.84
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.56
  • 62.56
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
  • 2.01e4
  • 2.10e4
  • 2.12e4
  • 2.15e4
58.91
  • 58.91
  • 32.60
  • 29.69
  • 29.01
  • 27.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.18
  • 46.18
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.13
  • 45.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.21
  • 43.21
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.88
  • 41.88
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.88e4
  • 1.88e4
  • 2.38e4
36.93
  • 36.93
  • 20.39
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.31
  • 34.31
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.97
  • 33.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.17
  • 24.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000104387.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Bilateria7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000104387.

Cross-references

EnsemblENSDARG00000104387 (slc4a5)
ZFINZDB-GENE-091112-19 (slc4a5)

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