D. rerio Gene: si:ch1073-153i20.4 - ENSDARG00000105350 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000105350
Namesi:ch1073-153i20.4
Descriptionsi:ch1073-153i20.4 [Source:ZFIN;Acc:ZDB-GENE-160113-41]
OrganismDanio rerio (zebrafish)
Orthologs(s)77 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.56e3
  • 8.56e3
  • 1.74e4
71.33
  • 71.33
  • 41.81
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.63e3
  • 8.63e3
  • 1.02e4
71.09
  • 71.09
  • 65.83
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.42e3
  • 9.42e3
68.44
  • 68.44
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
  • 1.87e4
61.25
  • 61.25
  • 37.23
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.46e4
  • 1.46e4
51.09
  • 51.09
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.59e4
  • 1.59e4
  • 1.83e4
  • 1.92e4
  • 2.29e4
46.91
  • 46.91
  • 38.87
  • 35.62
  • 23.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.70e4
  • 1.70e4
42.97
  • 42.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.14
  • 34.14
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.10e4
  • 2.10e4
29.67
  • 29.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.56e4
  • 2.56e4
14.29
  • 14.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species77 genesCompare expression

Orthology information comes from OMA : ENSDARG00000105350.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi16 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000105350.

Cross-references

EnsemblENSDARG00000105350 (si:ch1073-153i20.4)
ZFINZDB-GENE-160113-41 (si:ch1073-153i20.4)

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