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E. caballus Gene: HACD4 - ENSECAG00000000343 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000000343
NameHACD4
Description3-hydroxyacyl-CoA dehydratase 4 [Source:HGNC Symbol;Acc:HGNC:20920]
OrganismEquus caballus (horse)
Synonym(s)em:al662879.1, otthumg00000021016, ptplad2
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
2.67e3
  • 2.67e3
88.42
  • 88.42
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.35e3
  • 4.35e3
  • 5.01e3
81.16
  • 81.16
  • 78.28
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
5.61e3
  • 5.61e3
75.68
  • 75.68
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
8.52e3
  • 8.52e3
63.05
  • 63.05
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
9.43e3
  • 9.43e3
59.13
  • 59.13
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
9.52e3
  • 9.52e3
58.74
  • 58.74
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
9.64e3
  • 9.64e3
58.22
  • 58.22
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.79e3
  • 9.79e3
  • 1.09e4
57.58
  • 57.58
  • 52.59
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
55.97
  • 55.97
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.06e4
  • 1.06e4
54.25
  • 54.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
53.12
  • 53.12
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
1.10e4
  • 1.10e4
52.22
  • 52.22
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
51.39
  • 51.39
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.17e4
  • 1.17e4
49.35
  • 49.35
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.19e4
  • 1.19e4
  • 1.23e4
48.52
  • 48.52
  • 46.61
AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
47.86
  • 47.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
47.85
  • 47.85
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
43.22
  • 43.22
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
40.41
  • 40.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
40.04
  • 40.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.41e4
  • 1.41e4
  • 1.47e4
38.75
  • 38.75
  • 36.38
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
28.29
  • 28.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSECAG00000000343.

Cross-references

EnsemblENSECAG00000000343 (HACD4)
HGNCHGNC:20920 (HACD4)
Uniprot/SPTREMBLF7DP51, F7DP51_HORSE

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