E. caballus Gene: VSX1 - ENSECAG00000003028 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000003028
NameVSX1
Descriptionvisual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]
OrganismEquus caballus (horse)
Synonym(s)ppcd, ppcd1, ppd
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
52.85
  • 52.85
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
51.46
  • 51.46
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
50.40
  • 50.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.15e4
  • 1.15e4
  • 1.50e4
50.30
  • 50.30
  • 34.76
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.20e4
  • 1.20e4
  • 1.23e4
47.78
  • 47.78
  • 46.53
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
  • 1.23e4
47.58
  • 47.58
  • 46.54
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.23e4
  • 1.23e4
  • 1.30e4
46.76
  • 46.76
  • 43.48
AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.29e4
  • 1.29e4
43.96
  • 43.96
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.31e4
  • 1.31e4
  • 1.56e4
43.14
  • 43.14
  • 32.26
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
41.97
  • 41.97
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
41.52
  • 41.52
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
41.48
  • 41.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
41.41
  • 41.41
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
  • 1.39e4
40.34
  • 40.34
  • 39.69
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
39.41
  • 39.41
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
39.31
  • 39.31
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
34.15
  • 34.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSECAG00000003028.

Cross-references

EnsemblENSECAG00000003028 (VSX1)
HGNCHGNC:12723 (VSX1)
Uniprot/SPTREMBLF6YRV3, F6YRV3_HORSE

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