E. caballus Gene: SSBP1 - ENSECAG00000004023 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000004023
NameSSBP1
Descriptionsingle-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:11317]
OrganismEquus caballus (horse)
Synonym(s)mtssb, ssbp
Orthologs(s)27 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
683
  • 683
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
734
  • 734
96.82
  • 96.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
944
  • 944
  • 3.77e3
  • 5.61e3
  • 8.54e3
95.91
  • 95.91
  • 83.65
  • 75.69
  • 62.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.52e3
  • 1.52e3
  • 1.54e3
93.41
  • 93.41
  • 93.34
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.66e3
  • 1.66e3
  • 2.21e3
92.79
  • 92.79
  • 90.41
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.69e3
  • 1.69e3
92.69
  • 92.69
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.11e3
  • 2.11e3
  • 2.43e3
90.86
  • 90.86
  • 89.45
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
2.21e3
  • 2.21e3
90.41
  • 90.41
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
2.50e3
  • 2.50e3
89.16
  • 89.16
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.53e3
  • 2.53e3
  • 3.24e3
89.02
  • 89.02
  • 85.97
AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
2.86e3
  • 2.86e3
87.63
  • 87.63
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
3.16e3
  • 3.16e3
86.31
  • 86.31
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
3.19e3
  • 3.19e3
86.18
  • 86.18
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.78e3
  • 3.78e3
  • 4.61e3
83.60
  • 83.60
  • 80.01
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
4.45e3
  • 4.45e3
80.71
  • 80.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
4.52e3
  • 4.52e3
80.41
  • 80.41
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
4.55e3
  • 4.55e3
80.30
  • 80.30
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.84e3
  • 4.84e3
79.04
  • 79.04
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
4.87e3
  • 4.87e3
78.91
  • 78.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
5.50e3
  • 5.50e3
76.17
  • 76.17
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
5.54e3
  • 5.54e3
76.00
  • 76.00
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
5.55e3
  • 5.55e3
75.94
  • 75.94
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
6.94e3
  • 6.94e3
69.90
  • 69.90
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species15 genesCompare expression
Theria14 species16 genesCompare expression
Mammalia15 species17 genesCompare expression
Amniota17 species19 genesCompare expression
Tetrapoda18 species20 genesCompare expression
Euteleostomi19 species21 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSECAG00000004023.

Cross-references

EnsemblENSECAG00000004023 (SSBP1)
HGNCHGNC:11317 (SSBP1)
Uniprot/SPTREMBLF6RJN1, F6RJN1_HORSE

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