E. caballus Gene: TPH1 - ENSECAG00000006376 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000006376
NameTPH1
Descriptiontryptophan hydroxylase 1 [Source:HGNC Symbol;Acc:HGNC:12008]
OrganismEquus caballus (horse)
Synonym(s)tph, tprh
Orthologs(s)24 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
8.81e3
  • 8.81e3
61.79
  • 61.79
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.36e3
  • 9.36e3
  • 9.60e3
59.44
  • 59.44
  • 58.37
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.03e4
  • 1.03e4
  • 1.12e4
55.31
  • 55.31
  • 51.45
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.07e4
54.94
  • 54.94
  • 53.64
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
52.95
  • 52.95
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
  • 1.26e4
47.75
  • 47.75
  • 45.33
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
47.22
  • 47.22
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
45.04
  • 45.04
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.29e4
  • 1.29e4
44.21
  • 44.21
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.29e4
  • 1.29e4
44.11
  • 44.11
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
43.36
  • 43.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
43.14
  • 43.14
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
42.61
  • 42.61
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
42.51
  • 42.51
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
  • 1.39e4
41.61
  • 41.61
  • 39.81
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
  • 1.40e4
  • 1.51e4
41.35
  • 41.35
  • 39.17
  • 34.64
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
40.76
  • 40.76
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
40.68
  • 40.68
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
35.41
  • 35.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
32.23
  • 32.23
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.68e4
  • 1.68e4
27.31
  • 27.31
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.75e4
  • 1.75e4
24.04
  • 24.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSECAG00000006376.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSECAG00000006376.

Cross-references

EnsemblENSECAG00000006376 (TPH1)
HGNCHGNC:12008 (TPH1)
Uniprot/SPTREMBLF7CSE2, F7CSE2_HORSE

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